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L1_007_000M1_scaffold_625

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_625_1
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..138
-----------------
DNA (138bp)
protein (46aa)
Uncharacterized protein n=10 Tax=Bacteria RepID=E8LDQ8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN95487.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_000M1_scaffold_625_2
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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202..966
-----------------
DNA (765bp)
protein (255aa)
Methyltransferase domain protein n=4 Tax=Bacteria RepID=E8LDQ9_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:EFY05030.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
hypothetical protein
L1_007_000M1_scaffold_625_3
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

1916..3445
-----------------
DNA (1530bp)
protein (510aa)
Uncharacterized protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=V9HAI4_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:EFS26295.1}; TaxID=469617 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans ATCC 49185.;"
hypothetical protein
L1_007_000M1_scaffold_625_4
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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3442..3828
-----------------
DNA (387bp)
protein (129aa)
mutT; MutT (EC:3.6.1.1)
Mutator MutT protein/thiamine-phosphate pyrophosphorylase family protein n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I440_9FIRM
Mutator MutT protein/thiamine-phosphate pyrophosphorylase family protein {ECO:0000313|EMBL:CDB44943.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
L1_007_000M1_scaffold_625_5
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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3983..6211
-----------------
DNA (2229bp)
protein (743aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
ATP-dependent DNA helicase PcrA n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6J3T4_9FIRM
ATP-dependent DNA helicase PcrA
L1_007_000M1_scaffold_625_6
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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6352..8409
-----------------
DNA (2058bp)
protein (686aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
ligA; DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6IHY9_9FIRM
L1_007_000M1_scaffold_625_7
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8509..8835)
-----------------
DNA (327bp)
protein (109aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JQB7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS36400.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
Predicted branched-chain amino acid permeases (azaleucine resistance)
L1_007_000M1_scaffold_625_8
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8832..9521)
-----------------
DNA (690bp)
protein (230aa)
Azaleucine resistance protein AzlC n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JQA0_9FIRM
Azaleucine resistance protein AzlC {ECO:0000313|EMBL:EOS36399.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
Predicted branched-chain amino acid permease (azaleucine resistance)
L1_007_000M1_scaffold_625_9
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9674..10225
-----------------
DNA (552bp)
protein (184aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9VRH9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ59465.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
transcriptional regulator, XRE family
L1_007_000M1_scaffold_625_10
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(10373..10675)
-----------------
DNA (303bp)
protein (101aa)
Integrase core domain protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=E7FVR4_ERYRH
Integrase core domain protein {ECO:0000313|EMBL:EFY08984.1}; TaxID=525280 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Erysipelothrix rhusiopathiae ATCC 19414.;"
transposase of ISErh3
L1_007_000M1_scaffold_625_11
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10680..11210)
-----------------
DNA (531bp)
protein (177aa)
Transposase of ISErh3 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MH16_9CLOT
transposase of ISErh3
Transposase of ISErh3 {ECO:0000313|EMBL:AGF54231.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L1_007_000M1_scaffold_625_12
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11207..11599)
-----------------
DNA (393bp)
protein (131aa)
Transposase n=2 Tax=Clostridium saccharoperbutylacetonicum RepID=M1MPT8_9CLOT
transposase
Transposase {ECO:0000313|EMBL:AGF58218.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L1_007_000M1_scaffold_625_13
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11719..12219)
-----------------
DNA (501bp)
protein (167aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I6I6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB44940.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
conserved protein of DIM6/NTAB family
L1_007_000M1_scaffold_625_14
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

12519..12806
-----------------
DNA (288bp)
protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6IED5_9FIRM
glutamyl-tRNA(Gln) amidotransferase subunit C
L1_007_000M1_scaffold_625_15
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

12824..14290
-----------------
DNA (1467bp)
protein (489aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I434_9FIRM
glutamyl-tRNA(Gln) amidotransferase subunit A
L1_007_000M1_scaffold_625_16
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

14290..15732
-----------------
DNA (1443bp)
protein (481aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6J3S8_9FIRM
glutamyl-tRNA(Gln) amidotransferase subunit B
L1_007_000M1_scaffold_625_17
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15773..16081
-----------------
DNA (309bp)
protein (103aa)
Putative membrane protein n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6IEC9_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDB44934.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
hypothetical protein
L1_007_000M1_scaffold_625_18
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16579..21921
-----------------
DNA (5343bp)
protein (1781aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I428_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB44933.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
outer membrane autotransporter
L1_007_000M1_scaffold_625_19
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

22180..22836
-----------------
DNA (657bp)
protein (219aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6J3S3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB44932.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
hypothetical protein
L1_007_000M1_scaffold_625_20
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23055..23216
-----------------
DNA (162bp)
protein (54aa)
FeoB family ferrous iron (Fe2+) uptake protein n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6IHX3_9FIRM
FeoB family ferrous iron (Fe2+) uptake protein {ECO:0000313|EMBL:CDB44931.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
L1_007_000M1_scaffold_625_21
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23381..24505
-----------------
DNA (1125bp)
protein (375aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I6H5_9FIRM
L1_007_000M1_scaffold_625_22
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

24680..25411
-----------------
DNA (732bp)
protein (244aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6IEC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB44929.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
L1_007_000M1_scaffold_625_23
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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25425..26102
-----------------
DNA (678bp)
protein (226aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
7-cyano-7-deazaguanine synthase n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I421_9FIRM
7-cyano-7-deazaguanine synthase
L1_007_000M1_scaffold_625_24
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(26139..26633)
-----------------
DNA (495bp)
protein (165aa)
Acetyltransferase n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6J3R8_9FIRM
Acetyltransferase {ECO:0000313|EMBL:CDB44927.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
acetyltransferase
L1_007_000M1_scaffold_625_25
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(26633..27103)
-----------------
DNA (471bp)
protein (157aa)
Predicted transcriptional regulator marR family n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6IHW7_9FIRM
Predicted transcriptional regulator marR family {ECO:0000313|EMBL:CDB44926.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
transcriptional regulator, MarR family
L1_007_000M1_scaffold_625_26
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

27293..28534
-----------------
DNA (1242bp)
protein (414aa)
Outer membrane protein transport protein Ompp1/FadL/TodX family n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I6G5_9FIRM
Outer membrane protein transport protein Ompp1/FadL/TodX family {ECO:0000313|EMBL:CDB44925.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
aromatic hydrocarbon degradation membrane protein
L1_007_000M1_scaffold_625_27
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

28673..29191
-----------------
DNA (519bp)
protein (173aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6I415_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB44923.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:207.;"
L1_007_000M1_scaffold_625_28
unknown

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29597..29785
-----------------
DNA (189bp)
protein (63aa)

This feature has no annotations

L1_007_000M1_scaffold_625_29
unknown

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29782..29892
-----------------
DNA (111bp)
protein (37aa)

This feature has no annotations

L1_007_000M1_scaffold_625_30
unknown

Not on your lists

29909..30181
-----------------
DNA (273bp)
protein (91aa)

This feature has no annotations

Displaying items 1-30 of 70 in total

View Taxonomy