ggKbase home page

L1_007_000M1_scaffold_672

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_672_1
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..262
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BQ74_9BIFI
Putative transport protein {ECO:0000313|EMBL:BAR03109.1}; Uncharacterized protein {ECO:0000313|EMBL:EEG71637.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
membrane protein
L1_007_000M1_scaffold_672_2
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

262..1485
DNA (1224bp) protein (408aa)
Glycosyltransferase, group 2 family protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQ73_9BIFI
N-acetylglucosaminyltransferase {ECO:0000313|EMBL:KEF28751.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
N-acetylglucosaminyltransferase
L1_007_000M1_scaffold_672_3
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1565..3010
DNA (1446bp) protein (482aa)
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQ72_9BIFI
D-alanyl-D-alanine carboxypeptidase
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:AIZ14063.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L1_007_000M1_scaffold_672_4
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3015..4109
DNA (1095bp) protein (365aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
tRNA(Ile)-lysidine synthase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVQ6_9BIFI
tRNA(Ile)-lysidine synthetase
L1_007_000M1_scaffold_672_5
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4087..4659
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P2G9_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14904.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
hypoxanthine phosphoribosyltransferase
L1_007_000M1_scaffold_672_6
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4656..6758
DNA (2103bp) protein (701aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NRU5_9BIFI
ATPase AAA
L1_007_000M1_scaffold_672_7
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6758..7396
DNA (639bp) protein (213aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
GTP cyclohydrolase 1 n=2 Tax=Bifidobacterium RepID=B6XVQ9_9BIFI
GTP cyclohydrolase
L1_007_000M1_scaffold_672_8
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7460..8338
DNA (879bp) protein (293aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
Dihydropteroate synthase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVR0_9BIFI
dihydropteroate synthase
L1_007_000M1_scaffold_672_9
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8434..9957
DNA (1524bp) protein (508aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQ66_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:BAR03117.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
aldolase-pyrophosphokinase
L1_007_000M1_scaffold_672_10
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9954..10505
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XVR2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEG71628.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
membrane protein
L1_007_000M1_scaffold_672_11
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10511..11425)
DNA (915bp) protein (305aa)
Putative acyl-CoA thioesterase II n=2 Tax=Bifidobacterium RepID=B6XVR3_9BIFI
Acyl-CoA thioesterase {ECO:0000313|EMBL:BAR01363.1}; Putative acyl-CoA thioesterase II {ECO:0000313|EMBL:EEB21234.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
acyl-CoA thioesterase
L1_007_000M1_scaffold_672_12
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11739..13415)
DNA (1677bp) protein (559aa)
ATP-binding cassette protein, ChvD family n=2 Tax=Bifidobacterium RepID=B6XVR4_9BIFI
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIZ14071.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L1_007_000M1_scaffold_672_13
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13574..14497)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NY58_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC17033.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
hypothetical protein
L1_007_000M1_scaffold_672_14
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14668..16119
DNA (1452bp) protein (484aa)
Putative riboflavin biosynthesis protein RibD n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVR7_9BIFI
Putative riboflavin-specific deaminase {ECO:0000313|EMBL:BAR01367.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
hypothetical protein
L1_007_000M1_scaffold_672_15
unknown

Not on your lists

16138..16242
DNA (105bp) protein (35aa)

This feature has no annotations

L1_007_000M1_scaffold_672_16
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16347..16790)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVR8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEB21239.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
hypothetical protein
L1_007_000M1_scaffold_672_17
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16985..18484
DNA (1500bp) protein (500aa)
Amidohydrolase family protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVR9_9BIFI
Amidohydrolase family protein {ECO:0000313|EMBL:EEB21240.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR01369.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
amidohydrolase
L1_007_000M1_scaffold_672_18
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18783..20063)
DNA (1281bp) protein (427aa)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVS0_9BIFI
Putative O-acetylhomoserine (Thiol)-lyase {ECO:0000313|EMBL:BAR01370.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
O-acetylhomoserine (thiol)-lyase
L1_007_000M1_scaffold_672_19
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20296..21642
DNA (1347bp) protein (449aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
Xylose isomerase n=2 Tax=Bifidobacterium RepID=B6XVS1_9BIFI
xylose isomerase
L1_007_000M1_scaffold_672_20
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21975..23669
DNA (1695bp) protein (565aa)
Glycosyl hydrolase, family 43 n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQ35_9BIFI
Glycosyl hydrolase {ECO:0000313|EMBL:BAR03145.1}; Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EEG71598.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
alpha-L-arabinofuranosidase
L1_007_000M1_scaffold_672_21
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23802..24818)
DNA (1017bp) protein (339aa)
Sugar-binding domain protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQ34_9BIFI
Sugar-binding domain protein {ECO:0000313|EMBL:EEG71597.1}; Transcriptional regulator {ECO:0000313|EMBL:BAR03146.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
LacI family transcriptional regulator
L1_007_000M1_scaffold_672_22
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25177..26451
DNA (1275bp) protein (425aa)
ABC transporter, solute-binding protein n=2 Tax=Bifidobacterium RepID=C0BQ33_9BIFI
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EEG71596.1}; Putative sugar ABC transporter substrate binding component {ECO:0000313|EMBL:BAR03147.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
putative sugar transporter solute-binding protein
L1_007_000M1_scaffold_672_23
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26552..27595
DNA (1044bp) protein (348aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium RepID=C0BQ32_9BIFI
Sugar ABC transporter permease {ECO:0000313|EMBL:KEF28682.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
putative binding protein-dependent transporter
L1_007_000M1_scaffold_672_24
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27595..28488
DNA (894bp) protein (298aa)
ABC transporter, permease protein n=2 Tax=Bifidobacterium adolescentis RepID=A7A4D4_BIFAD
putative binding protein-dependent transporter
ABC transporter, permease protein {ECO:0000313|EMBL:EDN83767.1}; TaxID=411481 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis L2-32.;"
L1_007_000M1_scaffold_672_25
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28565..30196
DNA (1632bp) protein (544aa)
Glycosyl hydrolase, family 43 n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BQ30_9BIFI
Beta-1,4-xylosidase {ECO:0000313|EMBL:BAR03150.1}; Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EEG71593.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
xynB; beta-1,4-xylosidase
L1_007_000M1_scaffold_672_26
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30287..32251
DNA (1965bp) protein (655aa)
Glycosyl hydrolase family 2, sugar binding domain protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVT0_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:BAR01379.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
secreted protein
L1_007_000M1_scaffold_672_27
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32594..33223
DNA (630bp) protein (210aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVT2_9BIFI
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EEB21253.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
maltose O-acetyltransferase
L1_007_000M1_scaffold_672_28
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33393..33857
DNA (465bp) protein (155aa)
CHAP domain protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVT7_9BIFI
CHAP domain protein {ECO:0000313|EMBL:KFI66930.1}; TaxID=1150460 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense JCM 15439 = DSM 21854.;"
amidase
L1_007_000M1_scaffold_672_29
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34040..35560)
DNA (1521bp) protein (507aa)
Xylulokinase {ECO:0000313|EMBL:EEB21259.1}; EC=2.7.1.17 {ECO:0000313|EMBL:EEB21259.1};; Xylulose kinase {ECO:0000313|EMBL:BAR01385.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
Xylulokinase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVT8_9BIFI
xylulose kinase
L1_007_000M1_scaffold_672_30
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35730..36956
DNA (1227bp) protein (409aa)
ROK family protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVT9_9BIFI
Putative xylose repressor {ECO:0000313|EMBL:BAR01386.1}; ROK family protein {ECO:0000313|EMBL:EEB21260.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
NagC family transcriptional regulator
Displaying items 1-30 of 41 in total

View Taxonomy