ggKbase home page

L1_007_000M1_scaffold_689

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_689_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..283
DNA (282bp) protein (94aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L4Y3_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL14678.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_689_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(857..2230)
DNA (1374bp) protein (458aa)
Prophage LambdaCh01 site-specific recombinase phage integrase family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSE2_9FIRM
Prophage LambdaCh01 site-specific recombinase phage integrase family {ECO:0000313|EMBL:CCX81749.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Phage integrase family.
L1_007_000M1_scaffold_689_3
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2235..2444)
DNA (210bp) protein (70aa)
DNA binding domain excisionase family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNB5_9FIRM
DNA binding domain excisionase family {ECO:0000313|EMBL:CCX81745.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
DNA binding domain, excisionase family
L1_007_000M1_scaffold_689_4
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2434..2841)
DNA (408bp) protein (136aa)
Excisionase family DNA binding domain-containing protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNF8_9FIRM
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:CCX81743.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_689_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2933..3190)
DNA (258bp) protein (86aa)
DNA binding domain excisionase family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0H9_9FIRM
DNA binding domain excisionase family {ECO:0000313|EMBL:CCX81741.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
DNA binding domain, excisionase family
L1_007_000M1_scaffold_689_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3132..3698)
DNA (567bp) protein (189aa)
Growth inhibitor n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSD1_9FIRM
Growth inhibitor {ECO:0000313|EMBL:CCX81739.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Growth inhibitor
L1_007_000M1_scaffold_689_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3775..4293)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81737.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
RNA polymerase sigma factor, sigma-70 family
L1_007_000M1_scaffold_689_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4510..4752)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0H6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81736.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_689_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4754..5476)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSC7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81734.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_689_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5490..5744)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81733.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_689_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5747..6037)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0H1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81731.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_689_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6048..7283)
DNA (1236bp) protein (412aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
DNA polymerase IV n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DSC2_9FIRM
DNA-directed DNA polymerase
L1_007_000M1_scaffold_689_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7449..7865
DNA (417bp) protein (139aa)
Helix-turn-helix domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DNE6_9FIRM
Helix-turn-helix domain protein {ECO:0000313|EMBL:CCX81728.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
transcriptional regulator
L1_007_000M1_scaffold_689_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8163..8708
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82559.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted Zn peptidase
L1_007_000M1_scaffold_689_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8741..9043
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82560.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_689_16
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9126..10217)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WAE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CEK34610.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
L1_007_000M1_scaffold_689_17
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

10362..10547
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6U9T6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC76851.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
hypothetical protein
L1_007_000M1_scaffold_689_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10550..10927
DNA (378bp) protein (126aa)
TnpV protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DRR2_9FIRM
TnpV protein {ECO:0000313|EMBL:CCX82873.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_689_19
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11000..11335)
DNA (336bp) protein (112aa)
Response regulator receiver domain protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QRU9_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:CDC38560.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_000M1_scaffold_689_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11337..11852)
DNA (516bp) protein (172aa)
Osmosensitive K+ channel histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVB8_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CCX82874.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_689_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11849..12199)
DNA (351bp) protein (117aa)
Osmosensitive K+ channel histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DRG7_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CCX82875.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_689_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12305..12871)
DNA (567bp) protein (189aa)
Osmosensitive K+ channel histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E231_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CCX82877.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_689_23
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12912..13823)
DNA (912bp) protein (304aa)
Putative magnesium and cobalt transport protein CorA n=1 Tax=Eubacterium sp. CAG:202 RepID=R6N5R3_9FIRM
Putative magnesium and cobalt transport protein CorA {ECO:0000313|EMBL:CDC01601.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
Mg2+ and Co2+ transporters
L1_007_000M1_scaffold_689_24
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14208..14402)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6L3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38556.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L1_007_000M1_scaffold_689_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14652..17264)
DNA (2613bp) protein (871aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82884.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Cna protein B-type domain.
L1_007_000M1_scaffold_689_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17459..18049)
DNA (591bp) protein (197aa)
ParB-like partition proteins n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E245_9FIRM
ParB-like partition proteins {ECO:0000313|EMBL:CCX82887.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ParB-like partition proteins
L1_007_000M1_scaffold_689_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18073..18396)
DNA (324bp) protein (108aa)
ParB-like partition proteins n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E245_9FIRM
ParB-like partition proteins {ECO:0000313|EMBL:CCX82887.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ParB-like partition proteins
L1_007_000M1_scaffold_689_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18353..19177)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DRS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82888.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Chromosome partitioning protein parA
L1_007_000M1_scaffold_689_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19709..19888)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82889.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_689_30
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21064..21864
DNA (801bp) protein (267aa)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=2 Tax=Ruminococcus RepID=D4L522_9FIRM
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:CBL14717.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Displaying items 1-30 of 46 in total

View Taxonomy