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L1_007_000M1_scaffold_904

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_904_1
unknown

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1..78
DNA (78bp) protein (26aa)
ORF6N domain n=3 Tax=Clostridiales RepID=D4JLX4_9FIRM
ORF6N domain.
L1_007_000M1_scaffold_904_2
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

93..704
DNA (612bp) protein (204aa)
Putative uncharacterized protein {ECO:0000313|EMBL:EEC58255.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
L1_007_000M1_scaffold_904_3
unknown

Not on your lists

781..879
DNA (99bp) protein (33aa)

This feature has no annotations

L1_007_000M1_scaffold_904_4
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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911..1591
DNA (681bp) protein (227aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PXH1_9FIRM
L1_007_000M1_scaffold_904_5
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1606..1755
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P7D7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14436.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_904_6
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1880..2329
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NT85_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14435.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
VanZ family protein
L1_007_000M1_scaffold_904_7
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2298..2687
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P162_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14434.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_904_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2684..4789
DNA (2106bp) protein (702aa)
Leucyl aminopeptidase (Aminopeptidase T) n=1 Tax=Ruminococcus torques L2-14 RepID=D4M268_9FIRM
Leucyl aminopeptidase (Aminopeptidase T) {ECO:0000313|EMBL:CBL25330.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Leucyl aminopeptidase (aminopeptidase T)
L1_007_000M1_scaffold_904_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4914..5426
DNA (513bp) protein (171aa)
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=Clostridiales RepID=D4M267_9FIRM
L1_007_000M1_scaffold_904_10
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5459..6484
DNA (1026bp) protein (342aa)
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M266_9FIRM
L1_007_000M1_scaffold_904_11
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6478..7104
DNA (627bp) protein (209aa)
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930, ECO:0000313|EMBL:CBL25327.1};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase n=2 Tax=Clostridiales RepID=D4M265_9FIRM
L1_007_000M1_scaffold_904_12
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7118..8389
DNA (1272bp) protein (424aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:CBL25326.1}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:CBL25326.1};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Phosphoribosylamine--glycine ligase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M264_9FIRM
L1_007_000M1_scaffold_904_13
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8609..8917
DNA (309bp) protein (103aa)
Thioredoxin n=1 Tax=Ruminococcus torques L2-14 RepID=D4M263_9FIRM
thioredoxin
Thioredoxin {ECO:0000313|EMBL:CBL25325.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_904_14
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9052..12423
DNA (3372bp) protein (1124aa)
ATP-dependent nuclease subunit B n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P139_9FIRM
ATP-dependent nuclease subunit B {ECO:0000313|EMBL:CDC14414.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
ATP-dependent nuclease subunit B
L1_007_000M1_scaffold_904_15
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12420..16139
DNA (3720bp) protein (1240aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00145970};; ATP-dependent helicase/nuclease AddA {ECO:0000256|HAMAP-Rule:MF_01451}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
ATP-dependent helicase/nuclease subunit A n=1 Tax=Ruminococcus torques L2-14 RepID=D4M261_9FIRM
recombination helicase AddA, Firmicutes type
L1_007_000M1_scaffold_904_16
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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16136..16396
DNA (261bp) protein (87aa)
Predicted membrane protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M260_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBL25322.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_904_17
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16620..17822
DNA (1203bp) protein (401aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
LL-diaminopimelate aminotransferase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NT57_9FIRM
LL-diaminopimelate aminotransferase
L1_007_000M1_scaffold_904_18
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17936..20521)
DNA (2586bp) protein (862aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M259_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CBL25321.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
hypothetical protein
L1_007_000M1_scaffold_904_19
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20767..21210
DNA (444bp) protein (148aa)
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NT46_9FIRM
Ribose-5-phosphate isomerase {ECO:0000313|EMBL:CDC14400.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_904_20
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21293..22351
DNA (1059bp) protein (353aa)
Predicted membrane protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NQA2_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CDC14398.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted membrane protein
L1_007_000M1_scaffold_904_21
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22352..22987
DNA (636bp) protein (212aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted EndoIII-related endonuclease (EC:4.2.99.18)
Endonuclease III n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P798_9FIRM
L1_007_000M1_scaffold_904_22
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23081..23431)
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M255_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL25317.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_904_23
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23734..24057
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M254_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL25316.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_904_24
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24461..25054
DNA (594bp) protein (198aa)
xanthine phosphoribosyltransferase (EC:2.4.2.22)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Xanthine phosphoribosyltransferase n=2 Tax=Clostridiales RepID=D4M253_9FIRM
L1_007_000M1_scaffold_904_25
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25184..25882
DNA (699bp) protein (233aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Clostridiales RepID=D4M252_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDC14392.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L1_007_000M1_scaffold_904_26
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25854..27992
DNA (2139bp) protein (713aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NT36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC14390.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
two-component sensor histidine kinase
L1_007_000M1_scaffold_904_27
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28084..28764
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M251_9FIRM
conserved hypothetical protein TIGR00266
Uncharacterized protein {ECO:0000313|EMBL:CBL25313.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_904_28
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28870..29562)
DNA (693bp) protein (231aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NT31_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDC14385.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L1_007_000M1_scaffold_904_29
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29788..30162
DNA (375bp) protein (125aa)
Endoribonuclease L-PSP, putative n=2 Tax=Clostridiales RepID=D4M249_9FIRM
endoribonuclease L-PSP, putative
Endoribonuclease L-PSP, putative {ECO:0000313|EMBL:CBL25311.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L1_007_000M1_scaffold_904_30
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30390..31463)
DNA (1074bp) protein (358aa)
iron-only hydrogenase maturation protein HydE (EC:2.8.1.6)
Iron-only hydrogenase maturation protein HydE {ECO:0000313|EMBL:CBL25310.1}; EC=2.8.1.6 {ECO:0000313|EMBL:CBL25310.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Iron-only hydrogenase maturation protein HydE n=1 Tax=Ruminococcus torques L2-14 RepID=D4M248_9FIRM
Displaying items 1-30 of 59 in total

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