ggKbase home page

L1_007_000M1_scaffold_911

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_911_1
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..666)
-----------------
DNA (666bp)
protein (222aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.12 5.4.99.-)
Pseudouridine synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZQL1_9FIRM
L1_007_000M1_scaffold_911_2
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(677..1183)
-----------------
DNA (507bp)
protein (169aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=2 Tax=Clostridiales RepID=R7DBA9_9FIRM
L1_007_000M1_scaffold_911_3
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1180..2271)
-----------------
DNA (1092bp)
protein (364aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZQL3_9FIRM
L1_007_000M1_scaffold_911_4
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2291..3043)
-----------------
DNA (753bp)
protein (251aa)
Uncharacterized conserved protein contains S4-like domain n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DE38_9FIRM
Uncharacterized conserved protein contains S4-like domain {ECO:0000313|EMBL:CDD87687.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
Uncharacterized conserved protein, contains S4-like domain
L1_007_000M1_scaffold_911_5
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3067..3696)
-----------------
DNA (630bp)
protein (210aa)
Cell division protein SepF n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZQL5_9FIRM
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L1_007_000M1_scaffold_911_6
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3727..4419)
-----------------
DNA (693bp)
protein (231aa)
Pyridoxal phosphate enzyme, YggS family n=2 Tax=Clostridiales RepID=A5ZQL6_9FIRM
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:EDM88380.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
pyridoxal phosphate enzyme, YggS family
L1_007_000M1_scaffold_911_7
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4472..5887)
-----------------
DNA (1416bp)
protein (472aa)
Conserved domain protein n=2 Tax=Clostridiales RepID=R7DBB5_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDD87690.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
hypothetical protein
L1_007_000M1_scaffold_911_8
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6078..6698
-----------------
DNA (621bp)
protein (207aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZQL8_9FIRM
L1_007_000M1_scaffold_911_9
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6781..7137)
-----------------
DNA (357bp)
protein (119aa)
Ribosomal silencing factor RsfS n=2 Tax=Clostridiales RepID=A5ZRQ9_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
iojap-related protein
L1_007_000M1_scaffold_911_10
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7158..7763)
-----------------
DNA (606bp)
protein (202aa)
Hydrolase, HD family n=2 Tax=Clostridiales RepID=A5ZRR0_9FIRM
Hydrolase HD family {ECO:0000313|EMBL:CDD87693.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
conserved hypothetical protein TIGR00488
L1_007_000M1_scaffold_911_11
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7756..8403)
-----------------
DNA (648bp)
protein (216aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRR1_9FIRM
L1_007_000M1_scaffold_911_12
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8427..8717)
-----------------
DNA (291bp)
protein (97aa)
RNA-binding protein, YhbY family n=2 Tax=Clostridiales RepID=A5ZRR2_9FIRM
RNA-binding protein YhbY family {ECO:0000313|EMBL:CDD87695.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
conserved hypothetical protein TIGR00253
L1_007_000M1_scaffold_911_13
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8732..10024)
-----------------
DNA (1293bp)
protein (431aa)
GTPase Obg n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DBU0_9FIRM
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
Obg family GTPase CgtA
L1_007_000M1_scaffold_911_14
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10100..10387)
-----------------
DNA (288bp)
protein (96aa)
50S ribosomal protein L27 n=3 Tax=Clostridiales RepID=A5ZRR4_9FIRM
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
LSU ribosomal protein L27P
L1_007_000M1_scaffold_911_15
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10392..10712)
-----------------
DNA (321bp)
protein (107aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DCR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD87698.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
Predicted ribosomal protein
L1_007_000M1_scaffold_911_16
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10725..11030)
-----------------
DNA (306bp)
protein (102aa)
50S ribosomal protein L21 n=3 Tax=Clostridiales RepID=D4LT30_9FIRM
LSU ribosomal protein L21P
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L1_007_000M1_scaffold_911_17
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11307..11726)
-----------------
DNA (420bp)
protein (140aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZRR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD87700.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
hypothetical protein
L1_007_000M1_scaffold_911_18
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11872..13005)
-----------------
DNA (1134bp)
protein (378aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DBU6_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDD87701.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
D-alanyl-D-alanine carboxypeptidase
L1_007_000M1_scaffold_911_19
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13002..14162)
-----------------
DNA (1161bp)
protein (387aa)
Cell cycle protein, FtsW/RodA/SpoVE family n=2 Tax=Clostridiales RepID=A5ZRR9_9FIRM
Cell cycle protein FtsW/RodA/SpoVE family {ECO:0000313|EMBL:CDD87702.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
Bacterial cell division membrane protein
L1_007_000M1_scaffold_911_20
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14156..14410)
-----------------
DNA (255bp)
protein (85aa)
Cell division topological specificity factor MinE n=2 Tax=Clostridiales RepID=A5ZRS0_9FIRM
Cell division topological specificity factor {ECO:0000256|SAAS:SAAS00085645}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
cell division topological specificity factor MinE
L1_007_000M1_scaffold_911_21
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14444..15232)
-----------------
DNA (789bp)
protein (263aa)
Site-determining protein n=2 Tax=Clostridiales RepID=A5ZRS1_9FIRM
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
septum site-determining protein MinD
L1_007_000M1_scaffold_911_22
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15321..18230)
-----------------
DNA (2910bp)
protein (970aa)
Penicillin-binding protein transpeptidase domain protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7DBD1_9FIRM
Penicillin-binding protein transpeptidase domain protein {ECO:0000313|EMBL:CDD87705.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
pbpA1; penicillin-binding protein PbpA1
L1_007_000M1_scaffold_911_23
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18215..18742)
-----------------
DNA (528bp)
protein (176aa)
Rod shape-determining protein MreD n=2 Tax=Clostridiales RepID=A5ZRS3_9FIRM
Rod shape-determining protein MreD {ECO:0000313|EMBL:CDD87706.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
rod shape-determining protein MreD
L1_007_000M1_scaffold_911_24
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18739..19623)
-----------------
DNA (885bp)
protein (295aa)
Cell shape-determining protein MreC n=2 Tax=Clostridiales RepID=A5ZRS4_9FIRM
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
rod shape-determining protein MreC
L1_007_000M1_scaffold_911_25
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19660..20673)
-----------------
DNA (1014bp)
protein (338aa)
Cell shape determining protein, MreB/Mrl family n=2 Tax=Clostridiales RepID=A5ZRS5_9FIRM
Cell shape determining protein MreB/Mrl family {ECO:0000313|EMBL:CDD87708.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
Actin-like ATPase involved in cell morphogenesis
L1_007_000M1_scaffold_911_26
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20686..21396)
-----------------
DNA (711bp)
protein (237aa)
DNA repair protein RadC n=2 Tax=Clostridiales RepID=A5ZRS6_9FIRM
DNA repair protein RadC {ECO:0000313|EMBL:CDD87709.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
DNA replication and repair protein RadC
L1_007_000M1_scaffold_911_27
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21483..23123)
-----------------
DNA (1641bp)
protein (547aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRY5_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EDM87582.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Uncharacterized FAD-dependent dehydrogenases
L1_007_000M1_scaffold_911_28
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23066..24286)
-----------------
DNA (1221bp)
protein (407aa)
Flavoprotein family protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRY6_9FIRM
Flavoprotein family protein {ECO:0000313|EMBL:EDM87583.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Predicted flavoproteins
L1_007_000M1_scaffold_911_29
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24302..25579)
-----------------
DNA (1278bp)
protein (426aa)
Aluminum resistance protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRY7_9FIRM
Aluminum resistance protein {ECO:0000313|EMBL:EDM87584.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Cystathionine beta-lyase family protein involved in aluminum resistance
L1_007_000M1_scaffold_911_30
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25634..26581)
-----------------
DNA (948bp)
protein (316aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
tRNA isopentenyltransferase (miaA) (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRY8_9FIRM
Displaying items 1-30 of 34 in total

View Taxonomy