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L1_007_000M1_scaffold_3318

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_3318_1
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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261..1406
DNA (1146bp) protein (382aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UCA4_9FIRM
Cysteine desulfurase {ECO:0000313|EMBL:CDC68392.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L1_007_000M1_scaffold_3318_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2019..2867
DNA (849bp) protein (283aa)
EDD domain protein, DegV family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNL5_9FIRM
EDD domain protein, DegV family {ECO:0000313|EMBL:EFB76150.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
EDD domain protein, DegV family
L1_007_000M1_scaffold_3318_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3299..5080)
DNA (1782bp) protein (594aa)
Aspartate--tRNA ligase {ECO:0000313|EMBL:EFB76960.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EFB76960.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aspS1; Aspartate-tRNA ligase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJL2_9FIRM
L1_007_000M1_scaffold_3318_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5349..6209)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75938.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_3318_5
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6265..7086)
DNA (822bp) protein (274aa)
Filamentous hemagglutinin family N-terminal domain protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WVU7_9BURK
Filamentous hemagglutinin family N-terminal domain protein {ECO:0000313|EMBL:EHR69803.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
L1_007_000M1_scaffold_3318_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7191..8312)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75939.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_3318_7

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comp(8547..8837)
DNA (291bp) protein (97aa)
Uncharacterized protein (Fragment) n=2 Tax=human gut metagenome RepID=K1RZZ1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC48659.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_3318_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9174..11342)
DNA (2169bp) protein (723aa)
Tex-like protein N-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIZ0_9FIRM
Tex-like protein N-terminal domain protein {ECO:0000313|EMBL:EFB77499.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Transcriptional accessory protein
L1_007_000M1_scaffold_3318_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11545..13920)
DNA (2376bp) protein (792aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77498.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Bacterial membrane protein YfhO.
L1_007_000M1_scaffold_3318_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14263..14859
DNA (597bp) protein (199aa)
Predicted hydrolases of HD superfamily (EC:3.1.3.5)
HD domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY8_9FIRM
HD domain protein {ECO:0000313|EMBL:EFB77497.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_3318_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15000..15983)
DNA (984bp) protein (328aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA-dihydrouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY7_9FIRM
tRNA-U20-dihydrouridine synthase
L1_007_000M1_scaffold_3318_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16293..18806
DNA (2514bp) protein (838aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY6_9FIRM
L1_007_000M1_scaffold_3318_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19043..20050
DNA (1008bp) protein (336aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY5_9FIRM
L1_007_000M1_scaffold_3318_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20194..21855
DNA (1662bp) protein (554aa)
Glutamine--tRNA ligase {ECO:0000256|SAAS:SAAS00023088}; EC=6.1.1.18 {ECO:0000256|SAAS:SAAS00023088};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN66_9FIRM
L1_007_000M1_scaffold_3318_15
unknown

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comp(21893..22084)
DNA (192bp) protein (64aa)

This feature has no annotations

L1_007_000M1_scaffold_3318_16
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22127..23128)
DNA (1002bp) protein (334aa)
Alpha/beta hydrolase n=1 Tax=Roseburia sp. CAG:182 RepID=R7R0J2_9FIRM
Alpha/beta hydrolase {ECO:0000313|EMBL:CDF43433.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
alpha/beta hydrolase
L1_007_000M1_scaffold_3318_17

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comp(23224..23358)
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1UT05_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC81455.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_3318_18

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23484..24185
DNA (702bp) protein (234aa)
RNA polymerase, sigma 28 subunit, SigK n=1 Tax=human gut metagenome RepID=K1VBW0_9ZZZZ
RNA polymerase, sigma 28 subunit, SigK {ECO:0000313|EMBL:EKC81456.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
RNA polymerase sigma 28 subunit SigK
L1_007_000M1_scaffold_3318_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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24508..25251
DNA (744bp) protein (248aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNX4_9FIRM
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:EFB75470.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
minD; septum site-determining protein MinD
L1_007_000M1_scaffold_3318_20

Not on your lists

25306..25710
DNA (405bp) protein (135aa)
methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=1 Tax=human gut metagenome RepID=K1TU47_9ZZZZ
Methylglyoxal synthase {ECO:0000313|EMBL:EKC69710.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_3318_21
unknown

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26201..26431
DNA (231bp) protein (77aa)

This feature has no annotations

L1_007_000M1_scaffold_3318_22
unknown

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26515..27027
DNA (513bp) protein (171aa)

This feature has no annotations

L1_007_000M1_scaffold_3318_23
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26932..27543)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G4D0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDE22020.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
L1_007_000M1_scaffold_3318_24
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27537..29102)
DNA (1566bp) protein (522aa)
Type I restriction-modification system, M subunit n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J3P5_9FIRM
Type I restriction-modification system, M subunit {ECO:0000313|EMBL:EOS28820.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
type I restriction-modification system, M subunit
L1_007_000M1_scaffold_3318_25
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29319..29486)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N4X8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS78113.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
DNA-damage-inducible protein J
L1_007_000M1_scaffold_3318_26
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29543..30877)
DNA (1335bp) protein (445aa)
Type IV secretory pathway VirD4 component n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EKA9_9FIRM
Type IV secretory pathway VirD4 component {ECO:0000313|EMBL:CDA97101.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
Type IV secretory pathway, VirD4 component
L1_007_000M1_scaffold_3318_27
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30890..31579)
DNA (690bp) protein (230aa)
Plasmid mobilization protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6F515_9FIRM
Plasmid mobilization protein {ECO:0000313|EMBL:CDA97102.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
mob protein
L1_007_000M1_scaffold_3318_28
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31912..32520)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FJQ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMS70536.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
L1_007_000M1_scaffold_3318_29
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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33015..33668
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SG47_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP20160.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
SprT-like family.
L1_007_000M1_scaffold_3318_30
Clostridium sp. CAG:798, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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34015..34728
DNA (714bp) protein (238aa)
Resolvase n=1 Tax=Clostridium sp. CAG:798 RepID=R6XF37_9CLOT
Resolvase {ECO:0000313|EMBL:CDD17714.1}; TaxID=1262841 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:798.;"
pinE; Resolvase Family Protein
Displaying items 1-30 of 43 in total

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