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L1_007_000M1_scaffold_3903

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_3903_1
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1051..1992)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z810_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM51067.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
Domain of unknown function (DUF1848).
L1_007_000M1_scaffold_3903_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2160..3386)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRQ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74595.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_3903_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4180..5553
DNA (1374bp) protein (458aa)
Transporter n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8I6_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Na+-dependent transporters of the SNF family
L1_007_000M1_scaffold_3903_4

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6074..6406
DNA (333bp) protein (111aa)
Glycosylase (Fragment) n=1 Tax=human gut metagenome RepID=K1SBZ9_9ZZZZ
Glycosylase {ECO:0000313|EMBL:EKC44911.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Predicted glycosylase
L1_007_000M1_scaffold_3903_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6876..7781
DNA (906bp) protein (302aa)
mannose-6-phosphate isomerase, type 1 (EC:5.3.1.8)
Mannose-6-phosphate isomerase, type 1 {ECO:0000313|EMBL:CBL01966.1}; EC=5.3.1.8 {ECO:0000313|EMBL:CBL01966.1};; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
Mannose-6-phosphate isomerase, type 1 n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KAV3_9FIRM
L1_007_000M1_scaffold_3903_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8242..8598
DNA (357bp) protein (119aa)
LrgA family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H494_9FIRM
LrgA family protein {ECO:0000313|EMBL:EEU97426.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
LrgA family protein
L1_007_000M1_scaffold_3903_7
Firmicutes bacterium CAG:791, Firmicutes, Bacteria

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8595..9293
DNA (699bp) protein (233aa)
Putative effector of murein hydrolase n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5CIA3_9FIRM
Putative effector of murein hydrolase {ECO:0000313|EMBL:CCX66229.1}; TaxID=1262993 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:791.;"
Putative effector of murein hydrolase
L1_007_000M1_scaffold_3903_8
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9559..10587
DNA (1029bp) protein (343aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Putative 3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D591_9CLOT
L1_007_000M1_scaffold_3903_9
unknown

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comp(10861..11148)
DNA (288bp) protein (96aa)

This feature has no annotations

L1_007_000M1_scaffold_3903_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11468..12160)
DNA (693bp) protein (231aa)
Tat pathway signal sequence domain protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZNX8_9FIRM
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFQ05132.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L1_007_000M1_scaffold_3903_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12150..12689)
DNA (540bp) protein (180aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K1W2_9FIRM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CBL00261.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_007_000M1_scaffold_3903_12
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12852..13535
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L4K0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY74070.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
hypothetical protein
L1_007_000M1_scaffold_3903_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13617..15161)
DNA (1545bp) protein (515aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Carboxylesterase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4F0_9FIRM
carboxylesterase
L1_007_000M1_scaffold_3903_14
Blautia sp. CAG:237, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15248..15526
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:237 RepID=R6KRQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB77938.1}; TaxID=1262755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:237.;"
Signal transduction histidine kinase
L1_007_000M1_scaffold_3903_15
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15598..16941)
DNA (1344bp) protein (448aa)
MATE efflux family protein n=1 Tax=Eubacterium eligens CAG:72 RepID=R5ZHQ6_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDA38320.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
matE; MATE efflux family protein
L1_007_000M1_scaffold_3903_16
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17663..19234)
DNA (1572bp) protein (524aa)
Na+/melibiose symporter and related transporters n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q1U6_9FIRM
Na+/melibiose symporter and related transporters {ECO:0000313|EMBL:CDC30698.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Na+/melibiose symporter and related transporters
L1_007_000M1_scaffold_3903_17
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19428..20612)
DNA (1185bp) protein (395aa)
Beta-glucosidase (EC:3.2.1.21)
Glycosyl hydrolase family 3 protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6R8A6_9FIRM
Glycosyl hydrolase family 3 protein {ECO:0000313|EMBL:CDC30697.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L1_007_000M1_scaffold_3903_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20778..22442)
DNA (1665bp) protein (555aa)
bgl5; beta-glucosidase (EC:3.2.1.21)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZJB8_9FIRM
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:EFQ06726.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
L1_007_000M1_scaffold_3903_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22521..24440)
DNA (1920bp) protein (640aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.23)
Glycosyl hydrolase family 2, sugar binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIN0_9FIRM
Glycosyl hydrolase family 2, sugar binding domain protein {ECO:0000313|EMBL:EFB77389.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_3903_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24630..25853)
DNA (1224bp) protein (408aa)
Sensor histidine kinase VirS domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIM9_9FIRM
Sensor histidine kinase VirS domain protein {ECO:0000313|EMBL:EFB77388.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
two-component sensor kinase
Displaying 20 items

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