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L1_007_000M1_scaffold_1041

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1041_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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587..1528
DNA (942bp) protein (314aa)
CorA-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRL8_9FIRM
CorA-like protein {ECO:0000313|EMBL:EFB74666.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Mg2+ and Co2+ transporters
L1_007_000M1_scaffold_1041_2
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1646..2206
DNA (561bp) protein (187aa)
Sigma-70 region 2 n=1 Tax=Clostridium sp. CAG:91 RepID=R6VP77_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:CDC98840.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
RNA polymerase sigma-70 factor, ECF subfamily
L1_007_000M1_scaffold_1041_3
unknown

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2203..3609
DNA (1407bp) protein (469aa)

This feature has no annotations

L1_007_000M1_scaffold_1041_4

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3889..4773
DNA (885bp) protein (295aa)
Glycosyltransferase (Fragment) n=1 Tax=human gut metagenome RepID=K1TDW4_9ZZZZ
Glycosyltransferase {ECO:0000313|EMBL:EKC57401.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Glycosyltransferases involved in cell wall biogenesis
L1_007_000M1_scaffold_1041_5

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comp(4929..5312)
DNA (384bp) protein (128aa)
Iron-dependent transcriptional regulator n=2 Tax=human gut metagenome RepID=K1SHM8_9ZZZZ
Iron-dependent transcriptional regulator {ECO:0000313|EMBL:EKC53290.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
putative DtxR family transcriptional regulator
L1_007_000M1_scaffold_1041_6
Arctogadus glacialis, Arctogadus, Gadiformes, Neopterygii, Chordata, Metazoa

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comp(5467..6330)
DNA (864bp) protein (288aa)
Antifreeze glycoprotein n=1 Tax=Arctogadus glacialis RepID=H2KMI7_ARCGL
Antifreeze glycoprotein {ECO:0000313|EMBL:AAQ09569.1}; TaxID=185735 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Arctogadus.;" source="Arctogadus glacialis (Arctic cod).;"
Rhs element Vgr family protein
L1_007_000M1_scaffold_1041_7

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7080..7979
DNA (900bp) protein (300aa)
Metal-dependent hydrolases of the beta-lactamase superfamily III (EC:3.1.26.11)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA3_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61657.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L1_007_000M1_scaffold_1041_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7994..8335
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQD7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75094.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1041_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8358..8858
DNA (501bp) protein (167aa)
Acetyltransferase, GNAT family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQD6_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFB75093.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1041_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9368..10513
DNA (1146bp) protein (382aa)
Exonuclease SbcCD, D subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQD5_9FIRM
Exonuclease SbcCD, D subunit {ECO:0000313|EMBL:EFB75092.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
exonuclease SbcD
L1_007_000M1_scaffold_1041_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10510..13317
DNA (2808bp) protein (936aa)
Exonuclease SbcCD, C subunit n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SHZ0_9FIRM
Exonuclease SbcCD, C subunit {ECO:0000313|EMBL:EDP20712.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
hypothetical protein
L1_007_000M1_scaffold_1041_12
unknown

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13349..13450
DNA (102bp) protein (34aa)

This feature has no annotations

L1_007_000M1_scaffold_1041_13

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13627..15072
DNA (1446bp) protein (482aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZE98_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61652.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
arginine/lysine/ornithine decarboxylase
L1_007_000M1_scaffold_1041_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15198..15338
DNA (141bp) protein (47aa)
RSAM-modified six-cysteine peptide n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQF4_9FIRM
RSAM-modified six-cysteine peptide {ECO:0000313|EMBL:EFB75077.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1041_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15440..16894
DNA (1455bp) protein (485aa)
Six-Cys-in-45 modification radical SAM protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQF5_9FIRM
Six-Cys-in-45 modification radical SAM protein {ECO:0000313|EMBL:EFB75078.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Arylsulfatase regulator (Fe-S oxidoreductase)
L1_007_000M1_scaffold_1041_16
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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17062..18207
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GL57_EUBLK
hypothetical protein
Fe-S oxidoreductase {ECO:0000313|EMBL:KJF38815.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L1_007_000M1_scaffold_1041_17

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comp(18516..19022)
DNA (507bp) protein (169aa)
HD domain-containing protein (Fragment) n=1 Tax=human gut metagenome RepID=K1UGY8_9ZZZZ
HD domain-containing protein {ECO:0000313|EMBL:EKC79309.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_1041_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19019..19999)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75080.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CobW/HypB/UreG, nucleotide-binding domain.
L1_007_000M1_scaffold_1041_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20018..21190)
DNA (1173bp) protein (391aa)
CobW/P47K family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8W5_9FIRM
CobW/P47K family protein {ECO:0000313|EMBL:EEU95820.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Putative GTPases (G3E family)
L1_007_000M1_scaffold_1041_20
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21539..22252
DNA (714bp) protein (238aa)
Capsular polysaccharide biosynthesis protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P4F9_9FIRM
Capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:CDC15579.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Capsular polysaccharide biosynthesis protein
L1_007_000M1_scaffold_1041_21

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22249..22884
DNA (636bp) protein (212aa)
Capsular exopolysaccharide family n=1 Tax=human gut metagenome RepID=K1T844_9ZZZZ
Capsular exopolysaccharide family {ECO:0000313|EMBL:EKC62540.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ATPases involved in chromosome partitioning
L1_007_000M1_scaffold_1041_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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22948..24735
DNA (1788bp) protein (596aa)
Peptidase, M24 family {ECO:0000313|EMBL:EFB75083.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFB75083.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Xaa-Pro aminopeptidase (EC:3.4.11.9)
Peptidase, M24 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQG0_9FIRM
L1_007_000M1_scaffold_1041_23
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25283..26146
DNA (864bp) protein (288aa)
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Fructose-1 6-bisphosphate aldolase class II various bacterial and amitochondriate protist n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PSH2_9FIRM
Fructose-1 6-bisphosphate aldolase class II various bacterial and amitochondriate protist {ECO:0000313|EMBL:CDC27348.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L1_007_000M1_scaffold_1041_24
Enterococcus mundtii, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(26737..27615)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Enterococcus mundtii ATCC 882 RepID=R2QIB1_ENTMU
Uncharacterized protein {ECO:0000313|EMBL:EOH63269.1}; TaxID=1158598 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus mundtii ATCC 882.;"
hypothetical protein
L1_007_000M1_scaffold_1041_25
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27602..28318)
DNA (717bp) protein (239aa)
Sortase family protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAB5_9CLOT
Sortase family protein {ECO:0000313|EMBL:EEG31555.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
LPXTG-site transpeptidase (sortase) family protein
L1_007_000M1_scaffold_1041_26
unknown

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comp(28425..29024)
DNA (600bp) protein (200aa)

This feature has no annotations

L1_007_000M1_scaffold_1041_27

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comp(29300..30634)
DNA (1335bp) protein (445aa)
MATE efflux family protein n=2 Tax=human gut metagenome RepID=K1USB2_9ZZZZ
MATE efflux family protein {ECO:0000313|EMBL:EKC81180.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
MATE efflux family protein
L1_007_000M1_scaffold_1041_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30631..31599)
DNA (969bp) protein (323aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB75299.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB75299.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV3_9FIRM
glycosyl transferase family protein
L1_007_000M1_scaffold_1041_29
unknown

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comp(31647..33332)
DNA (1686bp) protein (562aa)

This feature has no annotations

L1_007_000M1_scaffold_1041_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33342..35885)
DNA (2544bp) protein (848aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
leucyl-tRNA synthetase, eubacterial and mitochondrial family (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV4_9FIRM
Displaying items 1-30 of 59 in total

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