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L1_007_000M1_scaffold_1042

Search features with annotation key words

Displaying items 31-47 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1042_31
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(37698..38018)
DNA (321bp) protein (107aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9U8_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFE13560.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Helix-turn-helix.
L1_007_000M1_scaffold_1042_32
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38182..38664
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9U7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE13559.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L1_007_000M1_scaffold_1042_33
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38681..39193
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9U6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE13558.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L1_007_000M1_scaffold_1042_34
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39370..39669)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9U5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE13557.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L1_007_000M1_scaffold_1042_35
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39662..40003)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9U4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE13556.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
HTH domain.
L1_007_000M1_scaffold_1042_36
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40004..40300)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9U3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE13555.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L1_007_000M1_scaffold_1042_37
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40720..41532
DNA (813bp) protein (271aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9U1_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFE13554.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Helix-turn-helix.
L1_007_000M1_scaffold_1042_38
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(41661..42278)
DNA (618bp) protein (206aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=E2SIR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW06266.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
hypothetical protein
L1_007_000M1_scaffold_1042_39
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42320..42532)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9T9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE13551.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Predicted transcriptional regulator
L1_007_000M1_scaffold_1042_40

Not on your lists

comp(42669..42920)
DNA (252bp) protein (84aa)
Uncharacterized protein n=4 Tax=root RepID=D1PJC3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKC75769.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_1042_41
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43061..44947)
DNA (1887bp) protein (629aa)
Type IV secretion system protein VirD4 n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JXL4_9FIRM
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:EOS38939.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
Type IV secretory pathway, VirD4 components
L1_007_000M1_scaffold_1042_42
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44944..45096)
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N7N7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS79113.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
L1_007_000M1_scaffold_1042_43
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(45093..45407)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZTB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM87073.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
hypothetical protein
L1_007_000M1_scaffold_1042_44
unknown

Not on your lists

comp(45439..45624)
DNA (186bp) protein (62aa)

This feature has no annotations

L1_007_000M1_scaffold_1042_45
Lactobacillus phage phiJB, Caudovirales, Viruses

Not on your lists

comp(45629..46291)
DNA (663bp) protein (221aa)
AntA/AntB antirepressor n=1 Tax=Lactobacillus phage phiJB RepID=U3PBD7_9CAUD
AntA/AntB antirepressor {ECO:0000313|EMBL:AGW43647.1}; TaxID=1399941 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Lactobacillus phage phiJB.;"
prophage LambdaSa1, antirepressor
L1_007_000M1_scaffold_1042_46
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(46304..47191)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:590 RepID=R5E2H0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX86663.1}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
hypothetical protein
L1_007_000M1_scaffold_1042_47
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(47555..48175)
DNA (621bp) protein (207aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YIG2_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EPD57272.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
RNA polymerase sigma factor, sigma-70 family
Displaying items 31-47 of 47 in total

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