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L1_007_000M1_scaffold_1204

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1204_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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106..1389
DNA (1284bp) protein (428aa)
POTRA domain protein, FtsQ-type n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMP2_9FIRM
POTRA domain protein, FtsQ-type {ECO:0000313|EMBL:EFB75827.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Cell division septal protein
L1_007_000M1_scaffold_1204_2
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1528..2028
DNA (501bp) protein (167aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JMV2_CELLD
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADZ85867.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L1_007_000M1_scaffold_1204_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2025..2642
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RV83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67824.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_007_000M1_scaffold_1204_4
unknown

Not on your lists

2626..3378
DNA (753bp) protein (251aa)

This feature has no annotations

L1_007_000M1_scaffold_1204_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3567..5000)
DNA (1434bp) protein (478aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMP1_9FIRM
L1_007_000M1_scaffold_1204_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5030..8716)
DNA (3687bp) protein (1229aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:EFB75825.1}; EC=6.3.5.3 {ECO:0000313|EMBL:EFB75825.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMP0_9FIRM
L1_007_000M1_scaffold_1204_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8723..10021)
DNA (1299bp) protein (433aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMN9_9FIRM
L1_007_000M1_scaffold_1204_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10206..11387)
DNA (1182bp) protein (394aa)
AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) (EC:2.1.2.3 3.5.4.10)
AICARFT/IMPCHase bienzyme n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMN8_9FIRM
AICARFT/IMPCHase bienzyme {ECO:0000313|EMBL:EFB75823.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1204_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11392..12123)
DNA (732bp) protein (244aa)
Putative IMP cyclohydrolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMN7_9FIRM
Putative IMP cyclohydrolase {ECO:0000313|EMBL:EFB75822.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Archaeal IMP cyclohydrolase
L1_007_000M1_scaffold_1204_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12145..12738)
DNA (594bp) protein (198aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMN6_9FIRM
L1_007_000M1_scaffold_1204_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12735..13775)
DNA (1041bp) protein (347aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMN5_9FIRM
L1_007_000M1_scaffold_1204_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13797..15266)
DNA (1470bp) protein (490aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZL65_9FIRM
L1_007_000M1_scaffold_1204_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15369..16082)
DNA (714bp) protein (238aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMN2_9FIRM
L1_007_000M1_scaffold_1204_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16178..16684)
DNA (507bp) protein (169aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMN1_9FIRM
L1_007_000M1_scaffold_1204_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17134..17655
DNA (522bp) protein (174aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMS4_9FIRM
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EFB75859.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1204_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17873..19273)
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75858.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1204_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19293..20750)
DNA (1458bp) protein (486aa)
MBOAT family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMS2_9FIRM
MBOAT family protein {ECO:0000313|EMBL:EFB75857.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
alginate O-acetyltransferase
L1_007_000M1_scaffold_1204_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20772..21134)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75856.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
M1_4931; hypothetical protein
L1_007_000M1_scaffold_1204_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21150..21878)
DNA (729bp) protein (243aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB75855.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB75855.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glycosyltransferase (EC:2.4.-.-)
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMS0_9FIRM
L1_007_000M1_scaffold_1204_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21916..23145)
DNA (1230bp) protein (410aa)
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:EFB75854.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB75854.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 1 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMR9_9FIRM
group 1 glycosyl transferase
L1_007_000M1_scaffold_1204_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23324..24463)
DNA (1140bp) protein (380aa)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EFB75853.1}; EC=5.1.3.14 {ECO:0000313|EMBL:EFB75853.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMR8_9FIRM
L1_007_000M1_scaffold_1204_22
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24763..25962)
DNA (1200bp) protein (400aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BDV6_9PORP
Capsular biosynthesis protein {ECO:0000313|EMBL:EXM40669.1}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
Nucleoside-diphosphate-sugar epimerases
L1_007_000M1_scaffold_1204_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25959..27011)
DNA (1053bp) protein (351aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
Polysaccharide biosynthesis protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMR6_9FIRM
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EFB75851.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1204_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27222..28445
DNA (1224bp) protein (408aa)
peptidase T (EC:3.4.11.4)
Peptidase T {ECO:0000256|SAAS:SAAS00064331, ECO:0000313|EMBL:CBL00952.1}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282, ECO:0000313|EMBL:CBL00952.1};; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
Peptidase T n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K7Y9_9FIRM
L1_007_000M1_scaffold_1204_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28757..29089)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLA9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76767.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1204_26
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29105..29455)
DNA (351bp) protein (117aa)
Putative transcriptional regulator n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VL72_CLOSH
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGC67409.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L1_007_000M1_scaffold_1204_27
Centipeda periodontii, Centipeda, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

29701..31827
DNA (2127bp) protein (709aa)
Polysaccharide deacetylase n=1 Tax=Centipeda periodontii DSM 2778 RepID=F5RKP4_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:EGK60972.1}; TaxID=888060 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Centipeda.;" source="Centipeda periodontii DSM 2778.;"
L1_007_000M1_scaffold_1204_28
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32049..32240)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:511 RepID=R7PKC3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF24782.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
4Fe-4S ferredoxin
L1_007_000M1_scaffold_1204_29

Not on your lists

comp(32294..33736)
DNA (1443bp) protein (481aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SPH3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC57279.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_1204_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33836..35179)
DNA (1344bp) protein (448aa)
Amino acid carrier protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIG3_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:EFB77548.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative sodium/amino acid symporter
Displaying items 1-30 of 60 in total

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