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L1_007_000M1_scaffold_1596

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1596_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1123..1746
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75145.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1596_2
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2202..2798
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N9J8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY98499.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Helix-turn-helix domain of resolvase.
L1_007_000M1_scaffold_1596_3
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2809..3537
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CCC9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD75849.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L1_007_000M1_scaffold_1596_4

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3690..4280
DNA (591bp) protein (197aa)
Restriction modification system DNA specificity subunit n=1 Tax=human gut metagenome RepID=K1U4Y9_9ZZZZ
Restriction modification system DNA specificity subunit {ECO:0000313|EMBL:EKC77328.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Type I restriction modification DNA specificity domain.
L1_007_000M1_scaffold_1596_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4277..5806
DNA (1530bp) protein (510aa)
Type I restriction-modification system, M subunit {ECO:0000313|EMBL:EFB75147.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EFB75147.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Type I restriction-modification system, M subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ94_9FIRM
type I restriction-modification system, M subunit
L1_007_000M1_scaffold_1596_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5803..6798
DNA (996bp) protein (332aa)
Toxin-antitoxin system, toxin component, Fic family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ95_9FIRM
Toxin-antitoxin system, toxin component, Fic family {ECO:0000313|EMBL:EFB75148.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
virulence protein
L1_007_000M1_scaffold_1596_7
unknown

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6827..7183
DNA (357bp) protein (119aa)

This feature has no annotations

L1_007_000M1_scaffold_1596_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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7180..8427
DNA (1248bp) protein (416aa)
Type I restriction endonuclease S subunit (Fragment) n=2 Tax=human gut metagenome RepID=K1S0Z1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KGF53106.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Restriction endonuclease S subunits (modular protein)
L1_007_000M1_scaffold_1596_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8418..9149
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U0E3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64626.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L1_007_000M1_scaffold_1596_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9162..12251
DNA (3090bp) protein (1030aa)
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:EFB75109.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EFB75109.1};; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hsdR2; type 1 restriction endonuclease HsdR (EC:3.1.21.3)
Type I site-specific deoxyribonuclease, HsdR family (Fragment) n=2 Tax=root RepID=D1PQA2_9FIRM
L1_007_000M1_scaffold_1596_11

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12257..12988
DNA (732bp) protein (244aa)
Zinc metalloprotease n=1 Tax=human gut metagenome RepID=K1TSJ6_9ZZZZ
Zinc metalloprotease {ECO:0000313|EMBL:EKC69155.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_1596_12

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comp(13381..13869)
DNA (489bp) protein (163aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1RVR7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC47429.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_1596_13

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comp(14089..14583)
DNA (495bp) protein (165aa)
Helix-turn-helix protein (Fragment) n=1 Tax=human gut metagenome RepID=K1U8B5_9ZZZZ
Helix-turn-helix protein {ECO:0000313|EMBL:EKC67766.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Helix-turn-helix.
L1_007_000M1_scaffold_1596_14

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14750..14986
DNA (237bp) protein (79aa)
Excisionase n=1 Tax=human gut metagenome RepID=K1TN56_9ZZZZ
Excisionase {ECO:0000313|EMBL:EKC67765.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_1596_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15737..16921
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75120.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1596_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16918..17187
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75121.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1596_17

Not on your lists

17174..18526
DNA (1353bp) protein (451aa)
Rlx protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SP65_9ZZZZ
Rlx protein {ECO:0000313|EMBL:EKC62457.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_1596_18
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18960..19301
DNA (342bp) protein (114aa)
TraG/TraD family protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DQU1_CLOS4
TraG/TraD family protein {ECO:0000313|EMBL:ERI98838.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
Type IV secretory pathway, VirD4 components
L1_007_000M1_scaffold_1596_19

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19374..19934
DNA (561bp) protein (187aa)
Type IV secretory pathway, VirD4 component n=1 Tax=human gut metagenome RepID=K1RY65_9ZZZZ
Type IV secretory pathway, VirD4 component {ECO:0000313|EMBL:EKC46365.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
TRAG family protein
Displaying 19 items

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