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L1_007_000M1_scaffold_1686

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1686_1
unknown

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comp(534..707)
DNA (174bp) protein (58aa)

This feature has no annotations

L1_007_000M1_scaffold_1686_2
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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comp(721..1635)
DNA (915bp) protein (305aa)
Periplasmic serine protease n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6Q308_9FIRM
Periplasmic serine protease {ECO:0000313|EMBL:CDC30140.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
Periplasmic serine protease
L1_007_000M1_scaffold_1686_3
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1837..2712)
DNA (876bp) protein (292aa)
NgoMIV restriction enzyme n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DTY7_CLOS4
NgoMIV restriction enzyme {ECO:0000313|EMBL:ERJ00361.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
type II DNA restriction endonuclease R.NGOI
L1_007_000M1_scaffold_1686_4
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2660..3646)
DNA (987bp) protein (329aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
Cytosine-specific methyltransferase n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F536_CLOS4
dcm; DNA-cytosine methyltransferase
L1_007_000M1_scaffold_1686_5
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3679..3900)
DNA (222bp) protein (74aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R6Y7Q4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ00363.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L1_007_000M1_scaffold_1686_6
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4047..4265)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q092_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK49766.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L1_007_000M1_scaffold_1686_7
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4241..4588)
DNA (348bp) protein (116aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0C8T6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERJ00364.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L1_007_000M1_scaffold_1686_8
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4736..5845)
DNA (1110bp) protein (370aa)
Plasmid recombination enzyme n=1 Tax=Blautia sp. CAG:37 RepID=R7JYL3_9FIRM
Plasmid recombination enzyme {ECO:0000313|EMBL:CDE67897.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
pre; putative plasmid recombination enzyme
L1_007_000M1_scaffold_1686_9

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comp(6271..6525)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1S7I6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC51404.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_1686_10
Desulfitobacterium dichloroeliminans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6622..7776)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0CAP7_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA68715.1}; TaxID=871963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1).;"
L1_007_000M1_scaffold_1686_11
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7769..8101)
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0BYB7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC36669.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L1_007_000M1_scaffold_1686_12
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8107..9183)
DNA (1077bp) protein (359aa)
Phage integrase n=2 Tax=Clostridium bolteae RepID=R0C8U0_9CLOT
Site-specific recombinase phage integrase family {ECO:0000313|EMBL:CDC02257.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
Site-specific recombinase XerD
L1_007_000M1_scaffold_1686_13

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comp(9170..9370)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1RQX2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC47793.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_1686_14
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9664..10194
DNA (531bp) protein (177aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0ANA2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC02259.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
hypothetical protein
L1_007_000M1_scaffold_1686_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10403..11947)
DNA (1545bp) protein (515aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit/GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL81_9FIRM
L1_007_000M1_scaffold_1686_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12231..13754)
DNA (1524bp) protein (508aa)
Glycosyltransferase, WecB/TagA/CpsF family {ECO:0000313|EMBL:EFB75283.1}; EC=2.4.1.- {ECO:0000313|EMBL:EFB75283.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family (EC:2.4.1.- 2.4.1.187)
Glycosyltransferase, WecB/TagA/CpsF family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPT7_9FIRM
L1_007_000M1_scaffold_1686_17

Not on your lists

comp(13881..14636)
DNA (756bp) protein (252aa)
Capsular polysaccharide biosynthesis protein (EC:3.1.3.48)
Capsular polysaccharide biosynthesis protein (Fragment) n=1 Tax=human gut metagenome RepID=K1U9S4_9ZZZZ
Capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:EKC74990.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_1686_18
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14636..15385)
DNA (750bp) protein (250aa)
Capsular exopolysaccharide family protein (Fragment) n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RSY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40313.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
capsular exopolysaccharide family
L1_007_000M1_scaffold_1686_19

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comp(15382..16080)
DNA (699bp) protein (233aa)
Chain length regulator (Capsular polysaccharide biosynthesis) (Fragment) n=1 Tax=human gut metagenome RepID=K1TBF2_9ZZZZ
Chain length regulator (Capsular polysaccharide biosynthesis) {ECO:0000313|EMBL:EKC67003.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Capsular polysaccharide biosynthesis protein
L1_007_000M1_scaffold_1686_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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17140..19350
DNA (2211bp) protein (737aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
helicase, putative, RecD/TraA family (EC:3.1.11.5)
Helicase, RecD/TraA family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL62_9FIRM
L1_007_000M1_scaffold_1686_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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19347..20153
DNA (807bp) protein (269aa)
Phosphoribosyl transferase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL61_9FIRM
Phosphoribosyl transferase domain protein {ECO:0000313|EMBL:EFB76719.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted amidophosphoribosyltransferases
L1_007_000M1_scaffold_1686_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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20235..21287
DNA (1053bp) protein (351aa)
Cell shape determining protein, MreB/Mrl family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL60_9FIRM
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:EFB76718.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Actin-like ATPase involved in cell morphogenesis
L1_007_000M1_scaffold_1686_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21456..24071
DNA (2616bp) protein (872aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
UvrD/REP helicase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL59_9FIRM
L1_007_000M1_scaffold_1686_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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24107..24889
DNA (783bp) protein (261aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
thymidylate synthase (FAD) (EC:2.1.1.148)
Thymidylate synthase ThyX n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL58_9FIRM
L1_007_000M1_scaffold_1686_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24882..25559
DNA (678bp) protein (226aa)
thymidylate kinase (EC:2.7.4.9)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76715.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1686_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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25612..26448
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL56_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76714.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1686_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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26503..27807
DNA (1305bp) protein (435aa)
YceG family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL55_9FIRM
YceG family protein {ECO:0000313|EMBL:EFB76713.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted periplasmic solute-binding protein
L1_007_000M1_scaffold_1686_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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27847..29073
DNA (1227bp) protein (409aa)
Peptidase, U32 family {ECO:0000313|EMBL:EFB76712.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFB76712.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Collagenase and related proteases (EC:3.4.-.-)
Peptidase, U32 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL54_9FIRM
L1_007_000M1_scaffold_1686_29
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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29421..30839
DNA (1419bp) protein (473aa)
Rhamnulokinase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYE9_9FIRM
Rhamnulokinase {ECO:0000313|EMBL:KJF41466.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
rhamnulokinase
L1_007_000M1_scaffold_1686_30
Prevotella bryantii, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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30864..32285
DNA (1422bp) protein (474aa)
L-arabinose isomerase {ECO:0000256|SAAS:SAAS00235488}; EC=5.3.1.4 {ECO:0000256|SAAS:SAAS00235488};; TaxID=752555 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella bryantii B14.;"
L-arabinose isomerase (EC:5.3.1.4)
arabinose isomerase n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B78788
Displaying items 1-30 of 58 in total

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