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L1_007_000M1_scaffold_1990

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1990_1

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comp(277..1800)
DNA (1524bp) protein (508aa)
ferredoxin hydrogenase, large subunit (EC:1.12.7.2)
Ferredoxin hydrogenase (Fragment) n=1 Tax=human gut metagenome RepID=K1RHJ0_9ZZZZ
Ferredoxin hydrogenase {ECO:0000313|EMBL:EKC48042.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_1990_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2046..3344)
DNA (1299bp) protein (433aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
tRNA methylthiotransferase YqeV n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM52_9FIRM
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:EFB75637.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1990_3

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3559..4722
DNA (1164bp) protein (388aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase (Fragment) n=1 Tax=human gut metagenome RepID=K1TM02_9ZZZZ
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EKC68594.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_1990_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4827..6158
DNA (1332bp) protein (444aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM50_9FIRM
L1_007_000M1_scaffold_1990_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6197..6601
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75634.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1990_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6812..7312
DNA (501bp) protein (167aa)
Putative ACR, COG1399 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM47_9FIRM
Putative ACR, COG1399 {ECO:0000313|EMBL:EFB75632.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted metal-binding, possibly nucleic acid-binding protein
L1_007_000M1_scaffold_1990_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7337..7525
DNA (189bp) protein (63aa)
50S ribosomal protein L32 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM46_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1990_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7609..8961
DNA (1353bp) protein (451aa)
Putative FeS-containing Cyanobacterial-specific oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM45_9FIRM
Putative FeS-containing Cyanobacterial-specific oxidoreductase {ECO:0000313|EMBL:EFB75630.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Fe-S oxidoreductase, related to NifB/MoaA family
L1_007_000M1_scaffold_1990_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9022..10353
DNA (1332bp) protein (444aa)
GTPase Der n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM44_9FIRM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosome-associated GTPase EngA
L1_007_000M1_scaffold_1990_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10375..11061
DNA (687bp) protein (229aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM43_9FIRM
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical integral membrane protein TIGR00023
L1_007_000M1_scaffold_1990_11
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11214..11717
DNA (504bp) protein (168aa)
Transcriptional regulator CarD family n=1 Tax=Clostridium sp. CAG:277 RepID=R7K342_9CLOT
Transcriptional regulator CarD family {ECO:0000313|EMBL:CDE70286.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
CarD-like/TRCF domain.
L1_007_000M1_scaffold_1990_12

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11917..12888
DNA (972bp) protein (324aa)
T4 family peptidase (Fragment) n=1 Tax=human gut metagenome RepID=K1SCK6_9ZZZZ
T4 family peptidase {ECO:0000313|EMBL:EKC53164.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L-aminopeptidase/D-esterase
L1_007_000M1_scaffold_1990_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13094..14323
DNA (1230bp) protein (410aa)
Gamma-glutamylcysteine synthetase (EC:6.3.2.2)
Putative glutamate--cysteine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL70_9FIRM
Putative glutamate--cysteine ligase {ECO:0000313|EMBL:EFB76728.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1990_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14411..14932
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76726.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1990_15
unknown

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15157..15645
DNA (489bp) protein (163aa)

This feature has no annotations

L1_007_000M1_scaffold_1990_16

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comp(15794..16255)
DNA (462bp) protein (154aa)
LuxS protein involved in autoinducer AI2 synthesis (EC:4.4.1.21)
S-ribosylhomocysteinase LuxS n=1 Tax=human gut metagenome RepID=K1U4E6_9ZZZZ
S-ribosylhomocysteinase LuxS {ECO:0000313|EMBL:EKC80132.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_1990_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16267..18015)
DNA (1749bp) protein (583aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM93_9FIRM
L1_007_000M1_scaffold_1990_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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18432..19607
DNA (1176bp) protein (392aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM91_9FIRM
L1_007_000M1_scaffold_1990_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19604..20464
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM90_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75675.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1990_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20543..21304
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75674.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1990_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21555..22010)
DNA (456bp) protein (152aa)
ACT domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS9_9FIRM
ACT domain protein {ECO:0000313|EMBL:EFB76587.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aspartokinases
L1_007_000M1_scaffold_1990_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22238..23482)
DNA (1245bp) protein (415aa)
Bacterial capsule synthesis protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT0_9FIRM
Bacterial capsule synthesis protein {ECO:0000313|EMBL:EFB76588.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)
L1_007_000M1_scaffold_1990_23

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comp(23473..24243)
DNA (771bp) protein (257aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase (Fragment) n=1 Tax=human gut metagenome RepID=K1V4G0_9ZZZZ
Dihydrodipicolinate reductase {ECO:0000313|EMBL:EKC78786.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_1990_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24329..25219)
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT2_9FIRM
L1_007_000M1_scaffold_1990_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25252..26331)
DNA (1080bp) protein (360aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EFB76591.1}; EC=1.2.1.11 {ECO:0000313|EMBL:EFB76591.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT3_9FIRM
L1_007_000M1_scaffold_1990_26
unknown

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comp(26328..26777)
DNA (450bp) protein (150aa)

This feature has no annotations

L1_007_000M1_scaffold_1990_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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26817..27845
DNA (1029bp) protein (343aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT5_9FIRM
L1_007_000M1_scaffold_1990_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27979..29112
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT7_9FIRM
L1_007_000M1_scaffold_1990_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29214..29576
DNA (363bp) protein (121aa)
Preprotein translocase, YajC subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT8_9FIRM
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EFB76596.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
preprotein translocase, YajC subunit
L1_007_000M1_scaffold_1990_30
unknown

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29654..30118
DNA (465bp) protein (155aa)

This feature has no annotations

Displaying items 1-30 of 37 in total

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