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L1_007_000M1_scaffold_666

Search features with annotation key words

Displaying items 1-30 of 196 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_666_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(97..3336)
DNA (3240bp) protein (1080aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77399.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_666_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3336..5849)
DNA (2514bp) protein (838aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77398.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RND family transporter
L1_007_000M1_scaffold_666_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6239..6613)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR5_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L12P
L1_007_000M1_scaffold_666_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6700..7215)
DNA (516bp) protein (172aa)
50S ribosomal protein L10 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR6_9FIRM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L10P
L1_007_000M1_scaffold_666_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7448..8140)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR7_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L1P
L1_007_000M1_scaffold_666_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8200..8625)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR8_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L11P
L1_007_000M1_scaffold_666_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8780..9322)
DNA (543bp) protein (181aa)
Transcription termination/antitermination protein NusG n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR9_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcription antitermination protein nusG
L1_007_000M1_scaffold_666_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9347..9655)
DNA (309bp) protein (103aa)
Protein translocase subunit SecE n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS0_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
preprotein translocase, SecE subunit, bacterial
L1_007_000M1_scaffold_666_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9675..9824)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS1_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L33P
L1_007_000M1_scaffold_666_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10056..13595)
DNA (3540bp) protein (1180aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative ATP-dependent nuclease subunit A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS3_9FIRM
recombination helicase AddA
L1_007_000M1_scaffold_666_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13879..17208)
DNA (3330bp) protein (1110aa)
Putative ATP-dependent nuclease subunit B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS4_9FIRM
Putative ATP-dependent nuclease subunit B {ECO:0000313|EMBL:EFB76372.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP-dependent nuclease, subunit B
L1_007_000M1_scaffold_666_12

Not on your lists

comp(17263..17901)
DNA (639bp) protein (213aa)
Sporulation stage II, protein R n=1 Tax=human gut metagenome RepID=K1URK6_9ZZZZ
Sporulation stage II, protein R {ECO:0000313|EMBL:EKC74091.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
putative stage II sporulation protein R
L1_007_000M1_scaffold_666_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18432..19349)
DNA (918bp) protein (306aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS6_9FIRM
L1_007_000M1_scaffold_666_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19377..20555)
DNA (1179bp) protein (393aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EFB76375.1}; EC=2.6.1.- {ECO:0000313|EMBL:EFB76375.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aminotransferase, class I/II n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLS7_9FIRM
Aspartate/tyrosine/aromatic aminotransferase
L1_007_000M1_scaffold_666_15

Not on your lists

comp(20555..21037)
DNA (483bp) protein (161aa)
Lrp/AsnC family transcriptional regulator (Fragment) n=1 Tax=human gut metagenome RepID=K1S4V2_9ZZZZ
Lrp/AsnC family transcriptional regulator {ECO:0000313|EMBL:EKC48775.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Transcriptional regulators
L1_007_000M1_scaffold_666_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21193..21996)
DNA (804bp) protein (268aa)
Putative DNA metabolism protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH5_9FIRM
Putative DNA metabolism protein {ECO:0000313|EMBL:EFB76923.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_666_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21975..23339)
DNA (1365bp) protein (455aa)
Putative DNA modification/repair radical SAM protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH6_9FIRM
Putative DNA modification/repair radical SAM protein {ECO:0000313|EMBL:EFB76924.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted DNA-binding protein with the Helix-hairpin-helix motif
L1_007_000M1_scaffold_666_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23510..24136)
DNA (627bp) protein (209aa)
DNA-binding helix-turn-helix protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH7_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFB76925.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SOS-response transcriptional repressors (RecA-mediated autopeptidases)
L1_007_000M1_scaffold_666_19
unknown

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24456..24740
DNA (285bp) protein (95aa)

This feature has no annotations

L1_007_000M1_scaffold_666_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24973..25722
DNA (750bp) protein (250aa)
CutC family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH9_9FIRM
CutC family protein {ECO:0000313|EMBL:EFB76927.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized protein involved in copper resistance
L1_007_000M1_scaffold_666_21
unknown

Not on your lists

comp(26415..26864)
DNA (450bp) protein (150aa)

This feature has no annotations

L1_007_000M1_scaffold_666_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27149..28297)
DNA (1149bp) protein (383aa)
lactaldehyde reductase (EC:1.1.1.77)
Lactaldehyde reductase {ECO:0000313|EMBL:CBL02698.1}; EC=1.1.1.77 {ECO:0000313|EMBL:CBL02698.1};; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
Lactaldehyde reductase n=2 Tax=Faecalibacterium prausnitzii RepID=D4KCY5_9FIRM
L1_007_000M1_scaffold_666_23
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28694..29380
DNA (687bp) protein (229aa)
L-serine ammonia-lyase (EC:4.3.1.17)
L-serine dehydratase iron-sulfur-dependent beta subunit n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H5E5_9FIRM
L-serine dehydratase iron-sulfur-dependent beta subunit {ECO:0000313|EMBL:CDE34526.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
L1_007_000M1_scaffold_666_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29383..30258
DNA (876bp) protein (292aa)
L-serine dehydratase, iron-sulfur-dependent, alpha subunit {ECO:0000313|EMBL:EEU98279.1}; EC=4.3.1.17 {ECO:0000313|EMBL:EEU98279.1};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
sdhA; L-serine dehydratase alpha chain (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, alpha subunit n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H1R9_9FIRM
L1_007_000M1_scaffold_666_25
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(30552..31541)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LIV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87413.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
Predicted transcriptional regulators
L1_007_000M1_scaffold_666_26
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31681..32172)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5Y8V4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA23893.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
hypothetical protein
L1_007_000M1_scaffold_666_27

Not on your lists

comp(32270..32662)
DNA (393bp) protein (131aa)
Penicillinase repressor (Fragment) n=1 Tax=human gut metagenome RepID=K1RKI8_9ZZZZ
Penicillinase repressor {ECO:0000313|EMBL:EKC49102.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Predicted transcriptional regulator
L1_007_000M1_scaffold_666_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33028..34125
DNA (1098bp) protein (366aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH2_9FIRM
L1_007_000M1_scaffold_666_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34272..35432
DNA (1161bp) protein (387aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EFB76919.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EFB76919.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
4-phosphoerythronate dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH1_9FIRM
L1_007_000M1_scaffold_666_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35792..35971)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76918.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying items 1-30 of 196 in total

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