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L1_007_000M1_scaffold_924

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_924_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(365..1276)
DNA (912bp) protein (304aa)
33 kDa chaperonin n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS2_9FIRM
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Disulfide bond chaperones of the HSP33 family
L1_007_000M1_scaffold_924_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1312..2085)
DNA (774bp) protein (258aa)
Methyltransferase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS1_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:EFB76579.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L1_007_000M1_scaffold_924_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2089..2679)
DNA (591bp) protein (197aa)
Probable GTP-binding protein EngB n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS0_9FIRM
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosome biogenesis GTP-binding protein YsxC/EngB
L1_007_000M1_scaffold_924_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2715..5159)
DNA (2445bp) protein (815aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53)
Lon protease n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKR9_9FIRM
L1_007_000M1_scaffold_924_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5245..6237)
DNA (993bp) protein (331aa)
Lipid kinase, YegS/Rv2252/BmrU family {ECO:0000313|EMBL:EFB76576.1}; EC=2.7.1.- {ECO:0000313|EMBL:EFB76576.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Lipid kinase, YegS/Rv2252/BmrU family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKR8_9FIRM
conserved protein of unknown function cotranscribed with Bmr (bmrU)
L1_007_000M1_scaffold_924_6

Not on your lists

comp(6443..7645)
DNA (1203bp) protein (401aa)
Carbamoylphosphate synthase large subunit (Fragment) n=1 Tax=human gut metagenome RepID=K1TEX6_9ZZZZ
Carbamoylphosphate synthase large subunit {ECO:0000313|EMBL:EKC71682.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Phosphoribosylamine-glycine ligase
L1_007_000M1_scaffold_924_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8023..9996
DNA (1974bp) protein (658aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76560.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_924_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9996..10940
DNA (945bp) protein (315aa)
Pseudouridine synthase, RluA family {ECO:0000313|EMBL:EFB76559.1}; EC=5.4.99.- {ECO:0000313|EMBL:EFB76559.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKQ1_9FIRM
RluA family pseudouridine synthase
L1_007_000M1_scaffold_924_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11214..12296)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76695.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_924_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12313..14361)
DNA (2049bp) protein (683aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
membrane protease FtsH catalytic subunit (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL38_9FIRM
L1_007_000M1_scaffold_924_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14428..14979)
DNA (552bp) protein (184aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EFB76697.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EFB76697.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL39_9FIRM
L1_007_000M1_scaffold_924_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14972..16429)
DNA (1458bp) protein (486aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL40_9FIRM
L1_007_000M1_scaffold_924_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16416..17810)
DNA (1395bp) protein (465aa)
Replicative DNA helicase {ECO:0000313|EMBL:EFB76699.1}; EC=3.6.1.- {ECO:0000313|EMBL:EFB76699.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL41_9FIRM
L1_007_000M1_scaffold_924_14

Not on your lists


comp(17865..18365)
DNA (501bp) protein (167aa)
Ribosomal protein L9 (Fragment) n=1 Tax=human gut metagenome RepID=K1RTW3_9ZZZZ
Ribosomal protein L9 {ECO:0000313|EMBL:EKC52012.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
LSU ribosomal protein L9P
L1_007_000M1_scaffold_924_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18395..20374)
DNA (1980bp) protein (660aa)
DHHA1 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL43_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:EFB76701.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L1_007_000M1_scaffold_924_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20433..22409)
DNA (1977bp) protein (659aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76703.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_924_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23029..23490
DNA (462bp) protein (154aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNase HI (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL46_9FIRM
L1_007_000M1_scaffold_924_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23523..24020
DNA (498bp) protein (166aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase {ECO:0000313|EMBL:EFB76705.1}; EC=2.1.1.61 {ECO:0000313|EMBL:EFB76705.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL47_9FIRM
Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
L1_007_000M1_scaffold_924_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24379..24771)
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ97_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK99346.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_007_000M1_scaffold_924_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24798..26069)
DNA (1272bp) protein (424aa)
Diaminopimelate decarboxylase (EC:4.1.1.20)
Putative diaminopimelate decarboxylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL49_9FIRM
Putative diaminopimelate decarboxylase {ECO:0000313|EMBL:EFB76707.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_924_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26370..27749)
DNA (1380bp) protein (460aa)
MATE efflux family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL50_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EFB76708.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative efflux protein, MATE family
L1_007_000M1_scaffold_924_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29255..30049
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76802.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_924_23
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30144..31364)
DNA (1221bp) protein (407aa)
Sodium/proton-potassium antiporter GerN, CPA2 family (TC 2.A.37.2.2) n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KCM3_9FIRM
sodium/proton-potassium antiporter GerN, CPA2 family (TC 2.A.37.2.2)
Sodium/proton-potassium antiporter GerN, CPA2 family (TC 2.A.37.2.2) {ECO:0000313|EMBL:CBL02586.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L1_007_000M1_scaffold_924_24
Treponema lecithinolyticum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

32005..32202
DNA (198bp) protein (66aa)
prevent-host-death protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E6F8
Prevent-host-death family protein {ECO:0000313|EMBL:ERJ91782.1}; TaxID=1321815 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema lecithinolyticum ATCC 700332.;"
hypothetical protein
L1_007_000M1_scaffold_924_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32427..34547)
DNA (2121bp) protein (707aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNAse R (EC:3.1.-.-)
Ribonuclease R n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLE7_9FIRM
L1_007_000M1_scaffold_924_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34804..35049)
DNA (246bp) protein (82aa)
Preprotein translocase, SecG subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLE8_9FIRM
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EFB76806.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
protein translocase, SecG subunit
L1_007_000M1_scaffold_924_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(35206..37464)
DNA (2259bp) protein (753aa)
Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit (EC:5.99.1.3)
DNA gyrase/topoisomerase IV, A subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMH4_9FIRM
DNA gyrase/topoisomerase IV, A subunit {ECO:0000313|EMBL:EFB75759.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_924_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37485..39464)
DNA (1980bp) protein (660aa)
Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit (EC:5.99.1.3)
DNA gyrase, B subunit, C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMH3_9FIRM
DNA gyrase, B subunit, C-terminal domain protein {ECO:0000313|EMBL:EFB75758.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_924_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39629..42592)
DNA (2964bp) protein (988aa)
UvrABC system protein A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL32_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
uvrA; UvrABC system protein A
L1_007_000M1_scaffold_924_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42589..44655)
DNA (2067bp) protein (689aa)
UvrABC system protein B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL33_9FIRM
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Excinuclease ABC subunit B
Displaying items 1-30 of 102 in total

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