ggKbase home page

L1_007_000M1_scaffold_6165

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_6165_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..189)
DNA (189bp) protein (63aa)
Putative efflux protein, MATE family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L157_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL13347.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_007_000M1_scaffold_6165_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(223..495)
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L156_9FIRM
Protein of unknown function (DUF1667).
Uncharacterized protein {ECO:0000313|EMBL:CBL13346.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L1_007_000M1_scaffold_6165_3

Not on your lists

comp(499..1110)
DNA (612bp) protein (204aa)
Protein containing DUF1706 (Fragment) n=1 Tax=human gut metagenome RepID=K1RDW5_9ZZZZ
Protein containing DUF1706 {ECO:0000313|EMBL:EKC46902.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_6165_4

Not on your lists

comp(1164..1721)
DNA (558bp) protein (186aa)
Peptidase E (EC:3.4.13.21)
Peptidase, S51 family n=1 Tax=human gut metagenome RepID=K1TPP6_9ZZZZ
Peptidase, S51 family {ECO:0000313|EMBL:EKC68275.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_6165_5
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1773..2942)
DNA (1170bp) protein (390aa)
aminotransferase (EC:2.6.1.-)
Aminotransferase {ECO:0000313|EMBL:BAK98160.1}; EC=2.6.1.- {ECO:0000313|EMBL:BAK98160.1};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Aminotransferase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KVT8_OSCVS
L1_007_000M1_scaffold_6165_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2966..4585)
DNA (1620bp) protein (540aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN70_9FIRM
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EFB76005.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase family associated with various cellular activities (AAA).
L1_007_000M1_scaffold_6165_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4845..6218)
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76004.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_6165_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6257..7216)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76003.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_6165_9

Not on your lists

7410..8789
DNA (1380bp) protein (460aa)
MATE efflux family protein (Fragment) n=2 Tax=human gut metagenome RepID=K1TXR3_9ZZZZ
MATE efflux family protein {ECO:0000313|EMBL:EKC74673.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
MATE efflux family protein
L1_007_000M1_scaffold_6165_10

Not on your lists

8796..9770
DNA (975bp) protein (325aa)
Acetyltransferase (GNAT) family n=1 Tax=human gut metagenome RepID=K1S716_9ZZZZ
Acetyltransferase (GNAT) family {ECO:0000313|EMBL:EKC51269.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Acetyltransferases
L1_007_000M1_scaffold_6165_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10367..10996)
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK98_9FIRM
L1_007_000M1_scaffold_6165_12

Not on your lists

comp(11079..11537)
DNA (459bp) protein (153aa)
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:EKC55434.1}; EC=5.3.1.- {ECO:0000313|EMBL:EKC55434.1};; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose 5-phosphate isomerase B n=1 Tax=human gut metagenome RepID=K1SJ48_9ZZZZ
L1_007_000M1_scaffold_6165_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11551..12258)
DNA (708bp) protein (236aa)
Universal bacterial protein YeaZ n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK96_9FIRM
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EFB76906.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Inactive homolog of metal-dependent proteases, putative molecular chaperone
L1_007_000M1_scaffold_6165_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12295..12720)
DNA (426bp) protein (142aa)
Conserved hypothetical nucleotide-binding protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K826_9FIRM
conserved hypothetical nucleotide-binding protein
Conserved hypothetical nucleotide-binding protein {ECO:0000313|EMBL:CBL00989.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L1_007_000M1_scaffold_6165_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12957..14126
DNA (1170bp) protein (390aa)
Cell cycle protein, FtsW/RodA/SpoVE family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK94_9FIRM
Cell cycle protein, FtsW/RodA/SpoVE family {ECO:0000313|EMBL:EFB76904.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Bacterial cell division membrane protein
L1_007_000M1_scaffold_6165_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14520..14735)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76903.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_6165_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14787..16076)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76285.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_6165_18

Not on your lists

16184..16675
DNA (492bp) protein (164aa)
Phosphatidylglycerophosphatase B n=1 Tax=human gut metagenome RepID=K1RJV0_9ZZZZ
Phosphatidylglycerophosphatase B {ECO:0000313|EMBL:EKC48877.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
PgpB; membrane-associated phospholipid phosphatase
L1_007_000M1_scaffold_6165_19
unknown

Not on your lists

16692..17249
DNA (558bp) protein (186aa)

This feature has no annotations

L1_007_000M1_scaffold_6165_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17437..18057)
DNA (621bp) protein (207aa)
Flavin reductase {ECO:0000313|EMBL:EFB76283.1}; EC=1.7.-.- {ECO:0000313|EMBL:EFB76283.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Flavin reductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM18_9FIRM
Multimeric flavodoxin WrbA
L1_007_000M1_scaffold_6165_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18217..19650
DNA (1434bp) protein (478aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K9U4_9FIRM
23S rRNA (uracil-5-)-methyltransferase RumA
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CBL01607.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L1_007_000M1_scaffold_6165_22
Coprococcus sp. ART55/1, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19736..20020)
DNA (285bp) protein (95aa)
Putative uncharacterized protein n=1 Tax=Coprococcus sp. ART55/1 RepID=D5HE97_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK83230.1}; TaxID=751585 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. ART55/1.;"
L1_007_000M1_scaffold_6165_23
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20182..20301)
DNA (120bp) protein (40aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R6CCJ0_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA69236.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
Displaying 23 items

View Taxonomy