ggKbase home page

L1_007_000M1_scaffold_2015

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2015_1
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(138..2081)
-----------------
DNA (1944bp)
protein (648aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
lysyl-tRNA synthetase n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B33B09
L1_007_000M1_scaffold_2015_2

Not on your lists

comp(2120..2608)
-----------------
DNA (489bp)
protein (163aa)
Transcription elongation factor GreA (Fragment) n=1 Tax=human gut metagenome RepID=K1UB96_9ZZZZ
Transcription elongation factor GreA {ECO:0000313|EMBL:EKC61175.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
transcription elongation factor GreA
L1_007_000M1_scaffold_2015_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3030..3386
-----------------
DNA (357bp)
protein (119aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76381.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2015_4

Not on your lists

3466..4398
-----------------
DNA (933bp)
protein (311aa)
Sortase, SrtB family (Fragment) n=1 Tax=human gut metagenome RepID=K1SMQ7_9ZZZZ
Sortase, SrtB family {ECO:0000313|EMBL:EKC48561.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
srtB; Sortase B
L1_007_000M1_scaffold_2015_5
unknown

Not on your lists

4408..6297
-----------------
DNA (1890bp)
protein (630aa)

This feature has no annotations

L1_007_000M1_scaffold_2015_6
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(6364..6864)
-----------------
DNA (501bp)
protein (167aa)
Acetyltransferase GNAT family n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D0H7_9FIRM
Acetyltransferase GNAT family {ECO:0000313|EMBL:CCX73673.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Acetyltransferase (GNAT) family.
L1_007_000M1_scaffold_2015_7

Not on your lists

7228..7524
-----------------
DNA (297bp)
protein (99aa)
Uncharacterized conserved protein UCP037246 n=1 Tax=human gut metagenome RepID=K1RRR9_9ZZZZ
Uncharacterized conserved protein UCP037246 {ECO:0000313|EMBL:EKC48083.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_2015_8

Not on your lists

7524..8129
-----------------
DNA (606bp)
protein (202aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1RHR3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC48082.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
HD domain.
L1_007_000M1_scaffold_2015_9

Not on your lists

comp(8280..10163)
-----------------
DNA (1884bp)
protein (628aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1U8L5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC81577.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_2015_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10413..11489)
-----------------
DNA (1077bp)
protein (359aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76387.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
cell surface-anchored protein
L1_007_000M1_scaffold_2015_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11580..12833)
-----------------
DNA (1254bp)
protein (418aa)
Cell division protein FtsZ n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLU0_9FIRM
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
cell division protein FtsZ
L1_007_000M1_scaffold_2015_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13132..14442)
-----------------
DNA (1311bp)
protein (437aa)
UDP-N-acetylglucosamine enolpyruvyl transferase (EC:2.5.1.7)
Putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLU2_9FIRM
Putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000313|EMBL:EFB76390.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2015_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14531..15118)
-----------------
DNA (588bp)
protein (196aa)
Putative dipicolinic acid synthetase, B subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLU3_9FIRM
Putative dipicolinic acid synthetase, B subunit {ECO:0000313|EMBL:EFB76391.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphopantothenoylcysteine synthetase/decarboxylase
L1_007_000M1_scaffold_2015_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15118..15939)
-----------------
DNA (822bp)
protein (274aa)
Putative dipicolinic acid synthetase, A subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLU4_9FIRM
Putative dipicolinic acid synthetase, A subunit {ECO:0000313|EMBL:EFB76392.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain.
L1_007_000M1_scaffold_2015_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16107..18098)
-----------------
DNA (1992bp)
protein (664aa)
Peptidase, M23 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLU5_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EFB76393.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Membrane-bound metallopeptidase
L1_007_000M1_scaffold_2015_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18149..19387)
-----------------
DNA (1239bp)
protein (413aa)
Peptidase, M23 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLU6_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EFB76394.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Membrane-bound metallopeptidase
L1_007_000M1_scaffold_2015_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19593..19823)
-----------------
DNA (231bp)
protein (77aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76395.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2015_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20099..21139)
-----------------
DNA (1041bp)
protein (347aa)
Putative A/G-specific adenine glycosylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLU8_9FIRM
Putative A/G-specific adenine glycosylase {ECO:0000313|EMBL:EFB76396.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
MutY; A/G-specific DNA glycosylase
L1_007_000M1_scaffold_2015_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21139..22524)
-----------------
DNA (1386bp)
protein (462aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLU9_9FIRM
L1_007_000M1_scaffold_2015_20
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22763..25537)
-----------------
DNA (2775bp)
protein (925aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:90 RepID=R7GYG6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE32469.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
Predicted membrane protein
L1_007_000M1_scaffold_2015_21

Not on your lists

comp(25692..26816)
-----------------
DNA (1125bp)
protein (375aa)
Stage II sporulation protein P (Fragment) n=1 Tax=human gut metagenome RepID=K1T6W8_9ZZZZ
Stage II sporulation protein P {ECO:0000313|EMBL:EKC63294.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
stage II sporulation protein P
L1_007_000M1_scaffold_2015_22

Not on your lists


27009..27278
-----------------
DNA (270bp)
protein (90aa)
Ribosomal protein S20 n=1 Tax=human gut metagenome RepID=K1STX1_9ZZZZ
Ribosomal protein S20 {ECO:0000313|EMBL:EKC57330.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
SSU ribosomal protein S20P
L1_007_000M1_scaffold_2015_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27359..27715)
-----------------
DNA (357bp)
protein (119aa)
Stage V sporulation protein AE n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV2_9FIRM
Stage V sporulation protein AE {ECO:0000313|EMBL:EFB76400.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
stage V sporulation protein AE
L1_007_000M1_scaffold_2015_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27712..28746)
-----------------
DNA (1035bp)
protein (345aa)
Stage V sporulation protein AD n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV3_9FIRM
Stage V sporulation protein AD {ECO:0000313|EMBL:EFB76401.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Stage V sporulation protein AD (SpoVAD).
L1_007_000M1_scaffold_2015_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28851..29291)
-----------------
DNA (441bp)
protein (147aa)
Putative stage V sporulation protein AC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV4_9FIRM
Putative stage V sporulation protein AC {ECO:0000313|EMBL:EFB76402.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
stage V sporulation protein AC
L1_007_000M1_scaffold_2015_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29348..29917)
-----------------
DNA (570bp)
protein (190aa)
Acetyltransferase, GNAT family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV5_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFB76403.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2015_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29998..30921
-----------------
DNA (924bp)
protein (308aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV6_9FIRM
L1_007_000M1_scaffold_2015_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30927..31664
-----------------
DNA (738bp)
protein (246aa)
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K965_9FIRM
L1_007_000M1_scaffold_2015_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31873..33441)
-----------------
DNA (1569bp)
protein (523aa)
phosphoenolpyruvate-protein phosphotransferase (EC:2.7.3.9)
PEP-utilizing enzyme, TIM barrel domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW1_9FIRM
PEP-utilizing enzyme, TIM barrel domain protein {ECO:0000313|EMBL:EFB76409.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2015_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33479..34678)
-----------------
DNA (1200bp)
protein (400aa)
Phospholipase, patatin family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLW0_9FIRM
Phospholipase, patatin family {ECO:0000313|EMBL:EFB76408.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted esterase of the alpha-beta hydrolase superfamily
Displaying items 1-30 of 45 in total

View Taxonomy