ggKbase home page

L1_007_000M1_scaffold_2094

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2094_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(253..2628)
DNA (2376bp) protein (792aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Endonuclease MutS2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKM5_9FIRM
MutS2 family protein
L1_007_000M1_scaffold_2094_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2702..3445)
DNA (744bp) protein (248aa)
DNA repair protein RecO n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKM4_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA replication and repair protein RecO
L1_007_000M1_scaffold_2094_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3683..4600)
DNA (918bp) protein (306aa)
GTPase Era n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKM3_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
era; GTPase Era
L1_007_000M1_scaffold_2094_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4688..5218)
DNA (531bp) protein (177aa)
dgkA; Diacylglycerol kinase (EC:2.7.1.107)
Putative undecaprenol kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKM2_9FIRM
Putative undecaprenol kinase {ECO:0000313|EMBL:EFB76530.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2094_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5226..5726)
DNA (501bp) protein (167aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Endoribonuclease YbeY n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKM1_9FIRM
conserved hypothetical protein TIGR00043
L1_007_000M1_scaffold_2094_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5826..6821)
DNA (996bp) protein (332aa)
PhoH family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKM0_9FIRM
PhoH family protein {ECO:0000313|EMBL:EFB76528.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L1_007_000M1_scaffold_2094_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7325..8218)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76523.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2094_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8225..8446)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKL6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76524.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2094_9
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8543..9589)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PVX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC27720.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Nucleoside recognition.
L1_007_000M1_scaffold_2094_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9671..10009
DNA (339bp) protein (113aa)
Putative sporulation protein YqfC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKL8_9FIRM
Putative sporulation protein YqfC {ECO:0000313|EMBL:EFB76526.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
YabP family.
L1_007_000M1_scaffold_2094_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9981..11150
DNA (1170bp) protein (390aa)
Putative sporulation protein YqfD n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKL9_9FIRM
Putative sporulation protein YqfD {ECO:0000313|EMBL:EFB76527.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative stage IV sporulation protein YqfD.
L1_007_000M1_scaffold_2094_12

Not on your lists

11418..11981
DNA (564bp) protein (188aa)
NUDIX hydrolase (Fragment) n=1 Tax=human gut metagenome RepID=K1RLY0_9ZZZZ
NUDIX hydrolase {ECO:0000313|EMBL:EKC44544.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NUDIX hydrolase
L1_007_000M1_scaffold_2094_13

Not on your lists

12431..12994
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SXA7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC59964.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_2094_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13545..14291)
DNA (747bp) protein (249aa)
Acyl-ACP thioesterase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMU1_9FIRM
Acyl-ACP thioesterase {ECO:0000313|EMBL:EFB75876.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Acyl-ACP thioesterase
L1_007_000M1_scaffold_2094_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14424..15674)
DNA (1251bp) protein (417aa)
ABC transporter, solute-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMU2_9FIRM
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EFB75877.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Spermidine/putrescine-binding periplasmic protein
L1_007_000M1_scaffold_2094_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15690..16532)
DNA (843bp) protein (281aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMU3_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB75878.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type spermidine/putrescine transport system, permease component II
L1_007_000M1_scaffold_2094_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16532..17353)
DNA (822bp) protein (274aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMU4_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB75879.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type spermidine/putrescine transport system, permease component I
L1_007_000M1_scaffold_2094_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17358..18434)
DNA (1077bp) protein (359aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
spermidine/putrescine ABC transporter ATP-binding subunit (EC:3.6.3.31)
Polyamine ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMU5_9FIRM
L1_007_000M1_scaffold_2094_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18978..20399)
DNA (1422bp) protein (474aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP5_9FIRM
L1_007_000M1_scaffold_2094_20
unknown

Not on your lists

comp(20807..21040)
DNA (234bp) protein (78aa)

This feature has no annotations

L1_007_000M1_scaffold_2094_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21222..22598
DNA (1377bp) protein (459aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|SAAS:SAAS00243344};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP2_9FIRM
L1_007_000M1_scaffold_2094_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23355..25646)
DNA (2292bp) protein (764aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW0_9FIRM
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EFB75895.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPases with chaperone activity, ATP-binding subunit
L1_007_000M1_scaffold_2094_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26012..27751
DNA (1740bp) protein (580aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75896.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L1_007_000M1_scaffold_2094_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27748..29520
DNA (1773bp) protein (591aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW2_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75897.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
multidrug ABC transporter ATPase and permease
L1_007_000M1_scaffold_2094_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29896..30906
DNA (1011bp) protein (337aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aspartate-ammonia ligase (EC:6.3.1.1)
Aspartate--ammonia ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW3_9FIRM
L1_007_000M1_scaffold_2094_26

Not on your lists

31701..32177
DNA (477bp) protein (159aa)
Protein containing Helix-turn-helix type 3 domain protein (Fragment) n=1 Tax=human gut metagenome RepID=K1S4N0_9ZZZZ
Protein containing Helix-turn-helix type 3 domain protein {ECO:0000313|EMBL:EKC55582.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
helix-turn-helix domain-containing protein
L1_007_000M1_scaffold_2094_27
[Eubacterium] cellulosolvens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32537..33640
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Eubacterium cellulosolvens 6 RepID=I5AU76_EUBCE
Uncharacterized protein {ECO:0000313|EMBL:EIM57349.1}; TaxID=633697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] cellulosolvens 6.;"
L1_007_000M1_scaffold_2094_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(34107..34973)
DNA (867bp) protein (289aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW4_9FIRM
L1_007_000M1_scaffold_2094_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35250..36464)
DNA (1215bp) protein (405aa)
Peptidase, S41 family {ECO:0000313|EMBL:EFB75900.1}; EC=3.4.21.- {ECO:0000313|EMBL:EFB75900.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Periplasmic protease (EC:3.4.21.102)
Peptidase, S41 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMW5_9FIRM
L1_007_000M1_scaffold_2094_30
unknown

Not on your lists

comp(36511..36615)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying items 1-30 of 88 in total

View Taxonomy