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L1_007_000M1_scaffold_2141

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2141_1
unknown

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comp(2..142)
DNA (141bp) protein (47aa)

This feature has no annotations

L1_007_000M1_scaffold_2141_2
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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936..1505
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GST3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE30474.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
hypothetical protein
L1_007_000M1_scaffold_2141_3
unknown

Not on your lists

1507..1680
DNA (174bp) protein (58aa)

This feature has no annotations

L1_007_000M1_scaffold_2141_4
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1720..2517)
DNA (798bp) protein (266aa)
Type IV secretory pathway VirD4 component n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EKA9_9FIRM
Type IV secretory pathway VirD4 component {ECO:0000313|EMBL:CDA97101.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
traG; conjugal transfer protein TraG
L1_007_000M1_scaffold_2141_5
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2687..3205
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B38354
Uncharacterized protein {ECO:0000313|EMBL:CDC21097.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
hypothetical protein
L1_007_000M1_scaffold_2141_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3240..3566
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZID5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ07041.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
HIRAN domain.
L1_007_000M1_scaffold_2141_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3757..3966
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP20852.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
hypothetical protein
L1_007_000M1_scaffold_2141_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4833..5402
DNA (570bp) protein (190aa)
Site-specific recombinase, phage integrase family n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDB7_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDP20849.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Site-specific recombinase XerD
L1_007_000M1_scaffold_2141_9
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5996..6856
DNA (861bp) protein (287aa)
Thioredoxin-disulfide reductase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T0L7_ROSHA
thioredoxin-disulfide reductase
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:AEN95549.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L1_007_000M1_scaffold_2141_10

Not on your lists

7021..7983
DNA (963bp) protein (321aa)
Immunogenic protein n=1 Tax=human gut metagenome RepID=K1SZC7_9ZZZZ
Immunogenic protein {ECO:0000313|EMBL:EKC59095.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
TRAP transporter solute receptor, TAXI family
L1_007_000M1_scaffold_2141_11
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7980..9167
DNA (1188bp) protein (396aa)
Sodium/glutamate symporter n=1 Tax=Eubacterium sp. CAG:146 RepID=R5G682_9FIRM
Sodium/glutamate symporter {ECO:0000313|EMBL:CCY12648.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
sodium--glutamate symport carrier (gltS)
L1_007_000M1_scaffold_2141_12

Not on your lists

9235..9429
DNA (195bp) protein (65aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1S6E9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC51044.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2141_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9582..10352)
DNA (771bp) protein (257aa)
HDIG domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNM8_9FIRM
HDIG domain protein {ECO:0000313|EMBL:EFB76163.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2141_14

Not on your lists

10616..11191
DNA (576bp) protein (192aa)
TetR family transcriptional regulator (Fragment) n=1 Tax=human gut metagenome RepID=K1UU60_9ZZZZ
TetR family transcriptional regulator {ECO:0000313|EMBL:EKC75111.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
TetR family transcriptional regulator
L1_007_000M1_scaffold_2141_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11261..11761
DNA (501bp) protein (167aa)
PTS system, glucose subfamily, IIA component n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNM6_9FIRM
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:EFB76161.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
PTS system glucose subfamily transporter subunit IIA
L1_007_000M1_scaffold_2141_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11924..12505
DNA (582bp) protein (194aa)
Peptidase, T1 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNM5_9FIRM
Peptidase, T1 family {ECO:0000313|EMBL:EFB76160.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2141_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12574..13212
DNA (639bp) protein (213aa)
Ribose 5-phosphate isomerase RpiB n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JXW5_9FIRM
Ribose 5-phosphate isomerase RpiB
Ribose 5-phosphate isomerase RpiB {ECO:0000313|EMBL:CBK98864.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_007_000M1_scaffold_2141_18
unknown

Not on your lists

13543..13647
DNA (105bp) protein (35aa)

This feature has no annotations

L1_007_000M1_scaffold_2141_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14100..15461
DNA (1362bp) protein (454aa)
Magnesium transporter n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNM2_9FIRM
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
mgtE; magnesium transporter MgtE
L1_007_000M1_scaffold_2141_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15636..17450
DNA (1815bp) protein (605aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNM1_9FIRM
L1_007_000M1_scaffold_2141_21

Not on your lists

17806..20859
DNA (3054bp) protein (1018aa)
CotH protein (Fragment) n=1 Tax=human gut metagenome RepID=K1T823_9ZZZZ
CotH protein {ECO:0000313|EMBL:EKC63664.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
cotH; similar to spore coat protein CotH
L1_007_000M1_scaffold_2141_22
unknown

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comp(21169..21723)
DNA (555bp) protein (185aa)

This feature has no annotations

L1_007_000M1_scaffold_2141_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


21887..22198
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNK2_9FIRM
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S10P
L1_007_000M1_scaffold_2141_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


22379..23011
DNA (633bp) protein (211aa)
50S ribosomal protein L3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNK1_9FIRM
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L3P
L1_007_000M1_scaffold_2141_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23026..23646
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNK0_9FIRM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L4P
L1_007_000M1_scaffold_2141_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23646..23939
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNJ9_9FIRM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L23P
L1_007_000M1_scaffold_2141_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24043..24873
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNJ8_9FIRM
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L2P
L1_007_000M1_scaffold_2141_28

Not on your lists


24889..25164
DNA (276bp) protein (92aa)
Ribosomal protein S19, bacterial-type n=1 Tax=human gut metagenome RepID=K1RW22_9ZZZZ
Ribosomal protein S19, bacterial-type {ECO:0000313|EMBL:EKC52672.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
SSU ribosomal protein S19P
L1_007_000M1_scaffold_2141_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25182..25517
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNJ6_9FIRM
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L22P
L1_007_000M1_scaffold_2141_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25530..26228
DNA (699bp) protein (233aa)
30S ribosomal protein S3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNJ5_9FIRM
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S3P
Displaying items 1-30 of 61 in total

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