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L1_007_000M1_scaffold_2150

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Displaying items 1-30 of 52 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2150_1
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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2..397
DNA (396bp) protein (132aa)
Plasmid recombination enzyme n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LDQ0_9FIRM
Plasmid recombination enzyme {ECO:0000313|EMBL:EFY05021.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
hypothetical protein
L1_007_000M1_scaffold_2150_2
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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441..596
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LDP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFY05020.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
hypothetical protein
L1_007_000M1_scaffold_2150_3
Bacteroides sp. 4_1_36, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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691..1008
DNA (318bp) protein (106aa)
Resolvase protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C8F1_9CLOT
Resolvase {ECO:0000313|EMBL:EFV24292.1}; TaxID=457393 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_1_36.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_007_000M1_scaffold_2150_4
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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954..1448
DNA (495bp) protein (165aa)
Resolvase, N-terminal domain protein n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SQ69_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EFP60403.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_007_000M1_scaffold_2150_5
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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1402..2055
DNA (654bp) protein (218aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GUB0_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBL41402.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L1_007_000M1_scaffold_2150_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2313..3272)
DNA (960bp) protein (320aa)
Putative Phosphate-binding protein PstS 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSE2_9FIRM
Putative Phosphate-binding protein PstS 2 {ECO:0000313|EMBL:EFB74427.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2150_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3725..5524
DNA (1800bp) protein (600aa)
Na/Pi-cotransporter II-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSD9_9FIRM
Na/Pi-cotransporter II-like protein {ECO:0000313|EMBL:EFB74424.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Na/Pi-cotransporter
L1_007_000M1_scaffold_2150_8

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5606..6304
DNA (699bp) protein (233aa)
Phosphate regulon response regulator PhoB (Fragment) n=1 Tax=human gut metagenome RepID=K1TQ88_9ZZZZ
Phosphate regulon response regulator PhoB {ECO:0000313|EMBL:EKC61446.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_000M1_scaffold_2150_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6297..7691
DNA (1395bp) protein (465aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Signal transduction histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSD7_9FIRM
L1_007_000M1_scaffold_2150_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8346..8651
DNA (306bp) protein (102aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRQ3_9FIRM
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EFB74594.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
two component transcriptional regulator
L1_007_000M1_scaffold_2150_11

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9189..9554
DNA (366bp) protein (122aa)
Protein containing Helix-turn-helix type 3 domain protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SZ72_9ZZZZ
Protein containing Helix-turn-helix type 3 domain protein {ECO:0000313|EMBL:EKC60664.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2150_12
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9595..10026
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL72878.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L1_007_000M1_scaffold_2150_13
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10029..10274
DNA (246bp) protein (82aa)
Predicted transcriptional regulator n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L909_9FIRM
Predicted transcriptional regulator
Predicted transcriptional regulator {ECO:0000313|EMBL:CBL16104.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_2150_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10323..10856)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNZ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79655.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted small molecule binding protein (contains 3H domain)
L1_007_000M1_scaffold_2150_15
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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11071..11730
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WTM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX72094.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L1_007_000M1_scaffold_2150_16

Not on your lists

11734..11934
DNA (201bp) protein (67aa)
Transcriptional regulator n=1 Tax=human gut metagenome RepID=K1SCN2_9ZZZZ
Transcriptional regulator {ECO:0000313|EMBL:EKC53194.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Predicted transcriptional regulators
L1_007_000M1_scaffold_2150_17
Dialister succinatiphilus, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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11982..12167
DNA (186bp) protein (62aa)
Putative uncharacterized protein n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1D0R8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO62863.1}; TaxID=742743 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister.;" source="Dialister succinatiphilus YIT 11850.;"
Dam-replacing family protein
L1_007_000M1_scaffold_2150_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12339..13685)
DNA (1347bp) protein (449aa)
NADP-specific glutamate dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU8_9FIRM
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2150_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13895..14890)
DNA (996bp) protein (332aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EFB75087.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EFB75087.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Lactate dehydrogenase and related dehydrogenases (EC:1.1.1.28)
4-phosphoerythronate dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQE2_9FIRM
L1_007_000M1_scaffold_2150_20

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comp(15085..15492)
DNA (408bp) protein (136aa)
Transcriptional regulator (Fragment) n=1 Tax=human gut metagenome RepID=K1RLS3_9ZZZZ
Transcriptional regulator {ECO:0000313|EMBL:EKC46358.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Predicted transcriptional regulators
L1_007_000M1_scaffold_2150_21

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comp(15958..17106)
DNA (1149bp) protein (383aa)
Metallophosphoesterase n=1 Tax=human gut metagenome RepID=K1RPD9_9ZZZZ
Metallophosphoesterase {ECO:0000313|EMBL:EKC50457.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
metallophosphoesterase
L1_007_000M1_scaffold_2150_22

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comp(17890..19290)
DNA (1401bp) protein (467aa)
sulfide dehydrogenase (flavoprotein) subunit SudA (EC:1.97.-.- 1.4.1.14 1.4.1.13)
Oxidoreductase (Fragment) n=1 Tax=human gut metagenome RepID=K1U1M8_9ZZZZ
Oxidoreductase {ECO:0000313|EMBL:EKC79127.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2150_23

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comp(19292..20134)
DNA (843bp) protein (281aa)
sulfide dehydrogenase (flavoprotein) subunit SudB (EC:1.18.1.2 1.97.-.-)
Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=human gut metagenome RepID=K1S1R4_9ZZZZ
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:EKC49324.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2150_24

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comp(20479..20637)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SLT7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC54795.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2150_25

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20974..21843
DNA (870bp) protein (290aa)
Transketolase, N-terminal subunit (EC:2.2.1.1)
Transketolase (Fragment) n=2 Tax=human gut metagenome RepID=K1SH76_9ZZZZ
Transketolase {ECO:0000313|EMBL:EKC54794.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2150_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21836..22792
DNA (957bp) protein (319aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase, pyridine binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ52_9FIRM
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:EFB75162.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2150_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22940..23464)
DNA (525bp) protein (175aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRE1_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EFB74745.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L1_007_000M1_scaffold_2150_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23436..25445)
DNA (2010bp) protein (670aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRD9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74743.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterised protein family (UPF0104).
L1_007_000M1_scaffold_2150_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25484..26236)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74742.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dTDP-glucose pyrophosphorylase
L1_007_000M1_scaffold_2150_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26238..27266)
DNA (1029bp) protein (343aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRD7_9FIRM
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EFB74741.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-glucose 4-epimerase
Displaying items 1-30 of 52 in total

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