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L1_007_000M1_scaffold_2585

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2585_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(296..1624)
DNA (1329bp) protein (443aa)
Putative permease n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP07_9FIRM
Putative permease {ECO:0000313|EMBL:EFB75503.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
uracil-xanthine permease
L1_007_000M1_scaffold_2585_2
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1952..2260
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VD72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC95035.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L1_007_000M1_scaffold_2585_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2427..3371
DNA (945bp) protein (315aa)
Transporter, auxin efflux carrier (AEC) family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJS9_9FIRM
Transporter, auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:EFB77027.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Auxin Efflux Carrier
L1_007_000M1_scaffold_2585_4
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3469..3939
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6R916_9FIRM
Putative peptidoglycan-binding domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:CDC30932.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L1_007_000M1_scaffold_2585_5
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4205..4420)
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=3 Tax=Eubacterium rectale RepID=C4ZAM0_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK93817.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_2585_6
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4482..4730)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5G018_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY09224.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
hypothetical protein
L1_007_000M1_scaffold_2585_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4871..6244)
DNA (1374bp) protein (458aa)
Citrate synthase (EC:2.3.3.5 2.3.3.1)
Citrate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIF3_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2585_8
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6722..7714
DNA (993bp) protein (331aa)
NAD-dependent isocitrate dehydrogenase (EC:1.1.1.41)
Isocitrate dehydrogenase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G6N6_9FIRM
Isocitrate dehydrogenase {ECO:0000313|EMBL:EFW06192.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
L1_007_000M1_scaffold_2585_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7745..9991
DNA (2247bp) protein (749aa)
Aconitase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIF4_9FIRM
Aconitase family protein {ECO:0000313|EMBL:EFB77539.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aconitase family protein
L1_007_000M1_scaffold_2585_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10707..11456
DNA (750bp) protein (250aa)
Metal cation transporter, ZIP family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP69_9FIRM
Metal cation transporter, ZIP family {ECO:0000313|EMBL:EFB75566.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
divalent heavy-metal cations transporter
L1_007_000M1_scaffold_2585_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11533..12867
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75564.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2585_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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13149..13856
DNA (708bp) protein (236aa)
Response regulator receiver domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP67_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFB75563.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_000M1_scaffold_2585_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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13891..15336
DNA (1446bp) protein (482aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP66_9FIRM
Signal transduction histidine kinase
L1_007_000M1_scaffold_2585_14

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15359..16315
DNA (957bp) protein (319aa)
Metal-dependent enzyme (Fragment) n=1 Tax=human gut metagenome RepID=K1VCA2_9ZZZZ
Metal-dependent enzyme {ECO:0000313|EMBL:EKC81656.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Predicted metal-dependent enzyme
L1_007_000M1_scaffold_2585_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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16309..17181
DNA (873bp) protein (291aa)
Protein-(Glutamine-N5) methyltransferase, release factor-specific {ECO:0000313|EMBL:EFB75560.1}; EC=2.1.1.- {ECO:0000313|EMBL:EFB75560.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Protein-(Glutamine-N5) methyltransferase, release factor-specific n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP64_9FIRM
HemK family putative methylases
L1_007_000M1_scaffold_2585_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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17416..18600
DNA (1185bp) protein (395aa)
Protein RecA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP63_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RecA protein
L1_007_000M1_scaffold_2585_17

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comp(18813..19082)
DNA (270bp) protein (90aa)
Holin n=1 Tax=human gut metagenome RepID=K1TB29_9ZZZZ
Holin {ECO:0000313|EMBL:EKC64659.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_2585_18
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19116..19367)
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RUH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF38521.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L1_007_000M1_scaffold_2585_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19370..20776)
DNA (1407bp) protein (469aa)
Glycosyl hydrolase family 25 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR98_9FIRM
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:EFB74800.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LycA
L1_007_000M1_scaffold_2585_20
Lactobacillus phage LLKu, C5likevirus, Caudovirales, Viruses

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comp(20788..21585)
DNA (798bp) protein (266aa)
Putative antireceptor n=1 Tax=Lactobacillus phage LL-Ku RepID=F7V9B9_9CAUD
Putative antireceptor {ECO:0000313|EMBL:AAV30180.1}; TaxID=297254 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae; C5likevirus.;" source="Lactobacillus phage LLKu.;"
hypothetical protein
L1_007_000M1_scaffold_2585_21
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21588..22577)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) RepID=E0S416_BUTPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL36154.1}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
L1_007_000M1_scaffold_2585_22
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(22585..22896)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6IMP4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDB47729.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
L1_007_000M1_scaffold_2585_23
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22899..23486)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3AIJ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFC98361.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
hypothetical protein
L1_007_000M1_scaffold_2585_24
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23476..23754)
DNA (279bp) protein (93aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7VS95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO61925.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
L1_007_000M1_scaffold_2585_25
unknown

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comp(23751..24080)
DNA (330bp) protein (110aa)

This feature has no annotations

L1_007_000M1_scaffold_2585_26
unknown

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comp(24101..24298)
DNA (198bp) protein (66aa)

This feature has no annotations

L1_007_000M1_scaffold_2585_27
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24311..24499)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M9B1_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF54534.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L1_007_000M1_scaffold_2585_28
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24496..25662)
DNA (1167bp) protein (389aa)
Uncharacterized protein (Fragment) n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BPA8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI74055.1}; Flags: Fragment;; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L1_007_000M1_scaffold_2585_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25659..27368)
DNA (1710bp) protein (570aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74805.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying 29 items

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