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L1_007_000M1_scaffold_2867

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2867_1
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(2..403)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LPH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87790.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
Transposase and inactivated derivatives
L1_007_000M1_scaffold_2867_2
unknown

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507..1316
DNA (810bp) protein (270aa)

This feature has no annotations

L1_007_000M1_scaffold_2867_3
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1824..3464)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IZI9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY42166.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ATP-binding cassette subfamily B protein
L1_007_000M1_scaffold_2867_4

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comp(3448..5121)
DNA (1674bp) protein (558aa)
ABC transporter, permease/ATP-binding protein (Fragment) n=1 Tax=human gut metagenome RepID=K1U514_9ZZZZ
ABC transporter, permease/ATP-binding protein {ECO:0000313|EMBL:EKC80357.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ABC-type multidrug transport system, ATPase and permease components
L1_007_000M1_scaffold_2867_5

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comp(5093..5698)
DNA (606bp) protein (202aa)
Transcriptional regulator, MarR family (Fragment) n=2 Tax=human gut metagenome RepID=K1RJZ6_9ZZZZ
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EKC48927.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Transcriptional regulators
L1_007_000M1_scaffold_2867_6

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5840..6667
DNA (828bp) protein (276aa)
tRNA/rRNA methyltransferase (SpoU) (Fragment) n=1 Tax=human gut metagenome RepID=K1SJY8_9ZZZZ
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:EKC54085.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
rRNA methylases
L1_007_000M1_scaffold_2867_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6862..7134
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZNC0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95692.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L1_007_000M1_scaffold_2867_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8029..8793)
DNA (765bp) protein (255aa)
Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000313|EMBL:EFB75185.1}; EC=6.3.4.15 {ECO:0000313|EMBL:EFB75185.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ42_9FIRM
L1_007_000M1_scaffold_2867_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8787..9308)
DNA (522bp) protein (174aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphodiesterase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ43_9FIRM
phosphodiesterase MJ0936 family protein
L1_007_000M1_scaffold_2867_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9289..10155)
DNA (867bp) protein (289aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H1T8_9FIRM
conserved hypothetical protein TIGR00096
L1_007_000M1_scaffold_2867_11

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10655..11314
DNA (660bp) protein (220aa)
Signal transduction response regulator n=1 Tax=human gut metagenome RepID=K1TGK3_9ZZZZ
Signal transduction response regulator {ECO:0000313|EMBL:EKC58401.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
two component transcriptional regulator
L1_007_000M1_scaffold_2867_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11554..12927
DNA (1374bp) protein (458aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU2_9FIRM
Signal transduction histidine kinase
L1_007_000M1_scaffold_2867_13

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12924..15119
DNA (2196bp) protein (732aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1U355_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC72825.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2867_14

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15314..16222
DNA (909bp) protein (303aa)
Alpha/beta hydrolase fold protein n=1 Tax=human gut metagenome RepID=K1TCU4_9ZZZZ
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EKC67523.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_2867_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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16795..17652
DNA (858bp) protein (286aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRB7_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB74760.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP-binding protein of ABC transporter system
L1_007_000M1_scaffold_2867_16

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17833..19293
DNA (1461bp) protein (487aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1U2H4_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC79442.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
putative membrane spanning protein, possibly ABC-type permease
L1_007_000M1_scaffold_2867_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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19280..20743
DNA (1464bp) protein (488aa)
Efflux ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRB5_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EFB74758.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
peptide ABC transporter permease
L1_007_000M1_scaffold_2867_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21172..22080)
DNA (909bp) protein (303aa)
Putative membrane protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR48_9FIRM
Putative membrane protein {ECO:0000313|EMBL:EFB74895.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Permeases of the drug/metabolite transporter (DMT) superfamily
L1_007_000M1_scaffold_2867_19

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comp(22173..22778)
DNA (606bp) protein (202aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TRU5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC75817.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_2867_20

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comp(23071..24138)
DNA (1068bp) protein (356aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1UCD7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC75910.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_2867_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24292..25482)
DNA (1191bp) protein (397aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EFB74587.1}; EC=2.6.1.- {ECO:0000313|EMBL:EFB74587.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aminotransferase, class I/II n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP6_9FIRM
putative aminotransferase
L1_007_000M1_scaffold_2867_22

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comp(25513..26166)
DNA (654bp) protein (218aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED (EC:3.1.3.18)
Phosphoglycolate phosphatase n=1 Tax=human gut metagenome RepID=K1U6J4_9ZZZZ
Phosphoglycolate phosphatase {ECO:0000313|EMBL:EKC80887.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2867_23

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26394..27269
DNA (876bp) protein (292aa)
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase UppP n=1 Tax=human gut metagenome RepID=K1U8Y0_9ZZZZ
Undecaprenyl-diphosphatase UppP {ECO:0000313|EMBL:EKC81742.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2867_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27540..29417)
DNA (1878bp) protein (626aa)
Arylsulfatase {ECO:0000313|EMBL:EFB74289.1}; EC=3.1.6.- {ECO:0000313|EMBL:EFB74289.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Arylsulfatase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSP2_9FIRM
Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
L1_007_000M1_scaffold_2867_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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29685..30521
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRI8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74714.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized conserved protein related to MYG1 family
L1_007_000M1_scaffold_2867_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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30473..31378
DNA (906bp) protein (302aa)
GIY-YIG catalytic domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRI9_9FIRM
GIY-YIG catalytic domain protein {ECO:0000313|EMBL:EFB74715.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
sortase
L1_007_000M1_scaffold_2867_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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31984..33852
DNA (1869bp) protein (623aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRQ1_9FIRM
L1_007_000M1_scaffold_2867_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(34264..34815)
DNA (552bp) protein (184aa)
GtrA-like protein n=2 Tax=Faecalibacterium prausnitzii RepID=D4K902_9FIRM
GtrA-like protein.
GtrA-like protein {ECO:0000313|EMBL:CBL01315.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L1_007_000M1_scaffold_2867_29
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(34835..37249)
DNA (2415bp) protein (805aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S9B6_9FIRM
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:EDP22199.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L1_007_000M1_scaffold_2867_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(37354..40254)
DNA (2901bp) protein (967aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS75_9FIRM
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:EFB74451.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying items 1-30 of 32 in total

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