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L1_007_000M1_scaffold_2955

Search features with annotation key words

Displaying items 31-60 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2955_31
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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38792..39367
DNA (576bp) protein (192aa)
Nitroreductase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJP3_9FIRM
Nitroreductase family protein {ECO:0000313|EMBL:EFB76991.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Nitroreductase
L1_007_000M1_scaffold_2955_32

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comp(39450..39860)
DNA (411bp) protein (137aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein {ECO:0000313|EMBL:EKC62170.1}; EC=1.4.-.- {ECO:0000313|EMBL:EKC62170.1};; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=human gut metagenome RepID=K1T738_9ZZZZ
hypothetical protein
L1_007_000M1_scaffold_2955_33
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(39921..41111)
DNA (1191bp) protein (397aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNX9_9FIRM
L1_007_000M1_scaffold_2955_34
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(41379..42233)
DNA (855bp) protein (285aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNY1_9FIRM
L1_007_000M1_scaffold_2955_35

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42617..42856
DNA (240bp) protein (80aa)
Acyl carrier protein n=1 Tax=human gut metagenome RepID=K1S2Y9_9ZZZZ
Acyl carrier protein {ECO:0000313|EMBL:EKC49759.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
acyl carrier protein
L1_007_000M1_scaffold_2955_36
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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42904..44343
DNA (1440bp) protein (480aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNY3_9FIRM
L1_007_000M1_scaffold_2955_37
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

44905..45975
DNA (1071bp) protein (357aa)
Sodium/calcium exchanger protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNY4_9FIRM
Sodium/calcium exchanger protein {ECO:0000313|EMBL:EFB75480.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CaCA family Na+/Ca+ antiporter
L1_007_000M1_scaffold_2955_38
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(46041..47183)
DNA (1143bp) protein (381aa)
Cell envelope-related function transcriptional attenuator common domain n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IBD3_9FIRM
Cell envelope-related function transcriptional attenuator common domain {ECO:0000313|EMBL:CCY34282.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_000M1_scaffold_2955_39
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(47251..47934)
DNA (684bp) protein (228aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00131176}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00064821};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00064819}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00131282}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
MTA/SAH nucleosidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPI8_9FIRM
L1_007_000M1_scaffold_2955_40
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(47952..49082)
DNA (1131bp) protein (377aa)
Ribosome-binding ATPase YchF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPI7_9FIRM
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
GTP-binding protein YchF
L1_007_000M1_scaffold_2955_41

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49511..50200
DNA (690bp) protein (230aa)
Two-component response regulator n=1 Tax=human gut metagenome RepID=K1UC21_9ZZZZ
Two-component response regulator {ECO:0000313|EMBL:EKC79728.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_000M1_scaffold_2955_42
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

50200..51675
DNA (1476bp) protein (492aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPI5_9FIRM
Signal transduction histidine kinase
L1_007_000M1_scaffold_2955_43
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51982..53175)
DNA (1194bp) protein (398aa)
DEAD/DEAH box helicase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPI4_9FIRM
DEAD/DEAH box helicase {ECO:0000313|EMBL:EFB75445.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Superfamily II DNA and RNA helicases
L1_007_000M1_scaffold_2955_44
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(53611..54438)
DNA (828bp) protein (276aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR7_9FIRM
Histidinol phosphate phosphatase HisJ family {ECO:0000313|EMBL:EFB77015.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2955_45

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comp(54438..55094)
DNA (657bp) protein (219aa)
phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19 3.6.1.31)
Phosphoribosyl-ATP diphosphatase (Fragment) n=2 Tax=human gut metagenome RepID=K1T029_9ZZZZ
Phosphoribosyl-ATP diphosphatase {ECO:0000313|EMBL:EKC61014.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2955_46
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(55274..56032)
DNA (759bp) protein (253aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hisF; imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR5_9FIRM
L1_007_000M1_scaffold_2955_47
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(56046..56762)
DNA (717bp) protein (239aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylidenea mino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR4_9FIRM
L1_007_000M1_scaffold_2955_48

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comp(56772..57389)
DNA (618bp) protein (206aa)
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit {ECO:0000313|EMBL:EKC51148.1}; EC=2.4.2.- {ECO:0000313|EMBL:EKC51148.1};; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
imidazole glycerol phosphate synthase subunit hisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit n=1 Tax=human gut metagenome RepID=K1S0K6_9ZZZZ
L1_007_000M1_scaffold_2955_49
unknown

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comp(57445..57942)
DNA (498bp) protein (166aa)

This feature has no annotations

L1_007_000M1_scaffold_2955_50
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(58046..59332)
DNA (1287bp) protein (429aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR2_9FIRM
L1_007_000M1_scaffold_2955_51
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(59675..60955)
DNA (1281bp) protein (427aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR1_9FIRM
L1_007_000M1_scaffold_2955_52
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(60952..62535)
DNA (1584bp) protein (528aa)
ATP phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00008790}; EC=2.4.2.17 {ECO:0000256|SAAS:SAAS00046302};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP phosphoribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR0_9FIRM
ATP phosphoribosyltransferase
L1_007_000M1_scaffold_2955_53
unknown

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comp(62727..63278)
DNA (552bp) protein (184aa)

This feature has no annotations

L1_007_000M1_scaffold_2955_54
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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63442..64062
DNA (621bp) protein (207aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2SE90_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK58225.1}; Flags: Fragment;; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L1_007_000M1_scaffold_2955_55
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

64261..65439
DNA (1179bp) protein (393aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EFB75393.1}; EC=2.6.1.- {ECO:0000313|EMBL:EFB75393.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aminotransferase, class I/II n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPD1_9FIRM
Aspartate/tyrosine/aromatic aminotransferase
L1_007_000M1_scaffold_2955_56
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(65833..66609)
DNA (777bp) protein (259aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
thiM; hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M357_9FIRM
L1_007_000M1_scaffold_2955_57

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comp(66626..67144)
DNA (519bp) protein (173aa)
ThiW (Fragment) n=1 Tax=human gut metagenome RepID=K1U899_9ZZZZ
ThiW {ECO:0000313|EMBL:EKC74500.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
thiW protein
L1_007_000M1_scaffold_2955_58

Not on your lists

67788..68420
DNA (633bp) protein (211aa)
thiE; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate pyrophosphorylase (Fragment) n=1 Tax=human gut metagenome RepID=K1SRL6_9ZZZZ
Thiamine-phosphate pyrophosphorylase {ECO:0000313|EMBL:EKC58039.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2955_59
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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68560..69372
DNA (813bp) protein (271aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CBL25770.1}; EC=2.7.4.7 {ECO:0000313|EMBL:CBL25770.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Phosphomethylpyrimidine kinase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3F8_9FIRM
L1_007_000M1_scaffold_2955_60

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69369..70544
DNA (1176bp) protein (392aa)
Hydroxymethylpyrimidine transporter CytX (Fragment) n=1 Tax=human gut metagenome RepID=K1S799_9ZZZZ
Hydroxymethylpyrimidine transporter CytX {ECO:0000313|EMBL:EKC53358.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
probable hydroxymethylpyrimidine transporter CytX
Displaying items 31-60 of 91 in total

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