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L1_007_000M1_scaffold_2955

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Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2955_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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198..1100
DNA (903bp) protein (301aa)
Phosphate ABC transporter, permease protein PstC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSE3_9FIRM
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:EFB74428.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pstC; phosphate ABC transporter permease
L1_007_000M1_scaffold_2955_2

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1093..2004
DNA (912bp) protein (304aa)
Phosphate ABC transporter, permease protein PstA (Fragment) n=1 Tax=human gut metagenome RepID=K1RJ40_9ZZZZ
Phosphate ABC transporter, permease protein PstA {ECO:0000313|EMBL:EKC43664.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
L1_007_000M1_scaffold_2955_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2021..2776
DNA (756bp) protein (252aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27)
Phosphate ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSE5_9FIRM
L1_007_000M1_scaffold_2955_4

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2793..3464
DNA (672bp) protein (224aa)
Phosphate transport system regulatory protein PhoU n=1 Tax=human gut metagenome RepID=K1UT31_9ZZZZ
Phosphate transport system regulatory protein PhoU {ECO:0000313|EMBL:EKC74681.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
phosphate transport system regulatory protein PhoU
L1_007_000M1_scaffold_2955_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3812..5623)
DNA (1812bp) protein (604aa)
ABC transporter, ATP-binding protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAM6_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDP21594.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
ABC-type multidrug transport system, ATPase and permease components
L1_007_000M1_scaffold_2955_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5623..7872)
DNA (2250bp) protein (750aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPZ7_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75189.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L1_007_000M1_scaffold_2955_7

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comp(7869..8363)
DNA (495bp) protein (165aa)
Transcriptional regulator, MarR family n=1 Tax=human gut metagenome RepID=K1U037_9ZZZZ
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EKC71740.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
MarR family transcriptional regulator
L1_007_000M1_scaffold_2955_8

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comp(8492..9760)
DNA (1269bp) protein (423aa)
1,4-beta-N-acetylmuramidase (EC:3.2.1.96)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SC18_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC54988.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_2955_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10049..12316)
DNA (2268bp) protein (756aa)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIT9_9FIRM
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:EFB77448.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glycoside hydrolase family 3
L1_007_000M1_scaffold_2955_10

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12854..15013
DNA (2160bp) protein (720aa)
Glycoside hydrolase, family 25 {ECO:0000313|EMBL:EKC77203.1}; EC=3.2.1.17 {ECO:0000313|EMBL:EKC77203.1};; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
1,4-beta-N-acetylmuramidase (EC:3.2.1.96)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TYG4_9ZZZZ
L1_007_000M1_scaffold_2955_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15323..15967
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74728.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_2955_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16374..17255)
DNA (882bp) protein (294aa)
ADP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; EC=4.2.1.136 {ECO:0000256|HAMAP-Rule:MF_01965};; ADP-dependent NAD(P)HX dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ADP-dependent (S)-NAD(P)H-hydrate dehydratase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJK6_9FIRM
yjeF C-terminal region, hydroxyethylthiazole kinase-related
L1_007_000M1_scaffold_2955_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17538..18287
DNA (750bp) protein (250aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
NAD-dependent protein deacetylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJK5_9FIRM
L1_007_000M1_scaffold_2955_14

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18439..19281
DNA (843bp) protein (281aa)
Phosphoglycolate phosphatase n=1 Tax=human gut metagenome RepID=K1U5V2_9ZZZZ
Phosphoglycolate phosphatase {ECO:0000313|EMBL:EKC80557.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_2955_15
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19254..19556)
DNA (303bp) protein (101aa)
PAP2 superfamily n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LAJ9_RUMC1
PAP2 superfamily.
PAP2 superfamily {ECO:0000313|EMBL:CBL16644.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_007_000M1_scaffold_2955_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19592..20860)
DNA (1269bp) protein (423aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA polymerase IV n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR84_9FIRM
DNA-directed DNA polymerase
L1_007_000M1_scaffold_2955_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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21168..22052
DNA (885bp) protein (295aa)
Aldose 1-epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJQ4_9FIRM
Aldose 1-epimerase {ECO:0000313|EMBL:EFB77002.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Galactose mutarotase and related enzymes
L1_007_000M1_scaffold_2955_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22389..23381)
DNA (993bp) protein (331aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR85_9FIRM
L1_007_000M1_scaffold_2955_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23686..24294
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75432.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted membrane protein
L1_007_000M1_scaffold_2955_20
Clostridium sp. SY8519, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24366..25448)
DNA (1083bp) protein (361aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1042156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain SY8519).;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium sp. (strain SY8519) RepID=F7V425_CLOSS
hypothetical protein
L1_007_000M1_scaffold_2955_21

Not on your lists

comp(25449..26006)
DNA (558bp) protein (186aa)
Metal dependent phosphohydrolase (Fragment) n=1 Tax=human gut metagenome RepID=K1S332_9ZZZZ
Metal dependent phosphohydrolase {ECO:0000313|EMBL:EKC48055.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
putative hydrolase
L1_007_000M1_scaffold_2955_22
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26112..27044)
DNA (933bp) protein (311aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QHV0_9FIRM
L1_007_000M1_scaffold_2955_23
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27483..27914
DNA (432bp) protein (144aa)
Transcriptional regulator BadM/Rrf2 family n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q418_9FIRM
Transcriptional regulator BadM/Rrf2 family {ECO:0000313|EMBL:CDC30480.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
transcriptional regulator, BadM/Rrf2 family
L1_007_000M1_scaffold_2955_24

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28284..29312
DNA (1029bp) protein (343aa)
Dicarboxylate-binding periplasmic protein n=2 Tax=human gut metagenome RepID=K1RW36_9ZZZZ
Dicarboxylate-binding periplasmic protein {ECO:0000313|EMBL:EKC52697.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
dctP; putative TRAP C4-dicarboxylate transport system DctP subunit
L1_007_000M1_scaffold_2955_25

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29309..29815
DNA (507bp) protein (169aa)
C4-dicarboxylate transport system permease small protein n=1 Tax=human gut metagenome RepID=K1S5F9_9ZZZZ
C4-dicarboxylate transport system permease small protein {ECO:0000313|EMBL:EKC52698.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
dctQ; putative TRAP C4-dicarboxylate transport system DctQ subunit
L1_007_000M1_scaffold_2955_26
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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29829..31139
DNA (1311bp) protein (437aa)
membrane protein n=1 Tax=Blautia producta RepID=UPI0003656295
Uncharacterized protein {ECO:0000313|EMBL:CDC91989.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
dctM; putative TRAP C4-dicarboxylate transport system permease
L1_007_000M1_scaffold_2955_27
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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31591..32883
DNA (1293bp) protein (431aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=2 Tax=Coprococcus RepID=C0B9Q6_9FIRM
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:CDB85512.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
L1_007_000M1_scaffold_2955_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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33371..34765
DNA (1395bp) protein (465aa)
Amino acid carrier protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K383_9FIRM
amino acid carrier protein
Amino acid carrier protein {ECO:0000313|EMBL:CBK97976.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_007_000M1_scaffold_2955_29
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35081..37666
DNA (2586bp) protein (862aa)
Putative peptidoglycan-binding domain-containing protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4KBM3_9FIRM
Putative peptidoglycan-binding domain-containing protein
Putative peptidoglycan-binding domain-containing protein {ECO:0000313|EMBL:CBL02236.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L1_007_000M1_scaffold_2955_30
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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37822..38511
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67497.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Putative peptidoglycan-binding domain-containing protein
Displaying items 1-30 of 91 in total

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