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L1_007_000M1_scaffold_65

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_65_1
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(182..3691)
DNA (3510bp) protein (1170aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Megasphaera sp. NM10 RepID=S7IT25_9FIRM
pyruvate-flavodoxin oxidoreductase
L1_007_000M1_scaffold_65_2
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4126..4671)
DNA (546bp) protein (182aa)
Glutathione peroxidase n=2 Tax=Megasphaera RepID=G0VLA5_MEGEL
glutathione peroxidase
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
L1_007_000M1_scaffold_65_3
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4694..5146)
DNA (453bp) protein (151aa)
Desulfoferrodoxin n=4 Tax=Megasphaera RepID=G0VLA6_MEGEL
desulfoferrodoxin
Desulfoferrodoxin {ECO:0000313|EMBL:EPP19014.1}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
L1_007_000M1_scaffold_65_4
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(5634..6653)
DNA (1020bp) protein (340aa)
Metallo-beta-lactamase domain protein n=2 Tax=Megasphaera RepID=S7HTQ4_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EPP19012.1}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
metallo-beta-lactamase domain protein
L1_007_000M1_scaffold_65_5
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(6715..7287)
DNA (573bp) protein (191aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
Peptidyl-tRNA hydrolase n=2 Tax=Megasphaera RepID=G0VLA9_MEGEL
peptidyl-tRNA hydrolase
L1_007_000M1_scaffold_65_6
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(7300..8265)
DNA (966bp) protein (322aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:CCC72490.1}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
Ribose-phosphate pyrophosphokinase n=2 Tax=Megasphaera RepID=G0VLB0_MEGEL
ribose-phosphate pyrophosphokinase
L1_007_000M1_scaffold_65_7
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(8340..9713)
DNA (1374bp) protein (458aa)
Bifunctional protein GlmU n=2 Tax=Megasphaera RepID=S7HHD2_9FIRM
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
bifunctional protein glmU
L1_007_000M1_scaffold_65_8
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(9856..10464)
DNA (609bp) protein (203aa)
3D domain protein n=2 Tax=Megasphaera RepID=G0VLB2_MEGEL
hypothetical protein
3D domain protein {ECO:0000313|EMBL:CCC72492.1}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
L1_007_000M1_scaffold_65_9
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(10679..12262)
DNA (1584bp) protein (528aa)
Chloride transporter n=1 Tax=Megasphaera elsdenii DSM 20460 RepID=G0VLB3_MEGEL
chloride transporter
Chloride transporter {ECO:0000313|EMBL:CCC72493.1}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
L1_007_000M1_scaffold_65_10
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

12462..13652
DNA (1191bp) protein (397aa)
Amidohydrolase n=1 Tax=Megasphaera elsdenii DSM 20460 RepID=G0VLB4_MEGEL
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:CCC72494.1}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
L1_007_000M1_scaffold_65_11
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13730..14704
DNA (975bp) protein (325aa)
Transporter n=2 Tax=Megasphaera RepID=S7HNL5_9FIRM
Transporter {ECO:0000313|EMBL:EPP19004.1}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
transporter
L1_007_000M1_scaffold_65_12
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

14955..16388
DNA (1434bp) protein (478aa)
Ammonium transporter n=2 Tax=Megasphaera RepID=S7HTK6_9FIRM
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
ammonium transporter
L1_007_000M1_scaffold_65_13
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16391..16765
DNA (375bp) protein (125aa)
Nitrogen regulatory protein P-II n=2 Tax=Megasphaera RepID=G0VLB7_MEGEL
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:CCC72497.1}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
L1_007_000M1_scaffold_65_14
Megasphaera micronuciformis, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16972..18252
DNA (1281bp) protein (427aa)
Transporter, major facilitator family protein n=1 Tax=Megasphaera micronuciformis F0359 RepID=E2Z9C9_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFQ05108.1}; TaxID=706434 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera micronuciformis F0359.;"
d-galactonate transporter
L1_007_000M1_scaffold_65_15
Megasphaera sp. BV3C16-1, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(18254..19147)
DNA (894bp) protein (298aa)
LysR substrate-binding domain protein n=1 Tax=Megasphaera sp. BV3C16-1 RepID=U7UFA2_9FIRM
LysR substrate-binding domain protein {ECO:0000313|EMBL:ERT57996.1}; TaxID=1111454 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. BV3C16-1.;"
HTH-type transcriptional regulator gltC
L1_007_000M1_scaffold_65_16
Megasphaera micronuciformis, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

19542..21548
DNA (2007bp) protein (669aa)
NADH:flavin oxidoreductase (EC:1.6.-.-)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Megasphaera micronuciformis F0359 RepID=E2Z9D4_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFQ05113.1}; TaxID=706434 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera micronuciformis F0359.;"
L1_007_000M1_scaffold_65_17
Megasphaera micronuciformis, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

21687..22565
DNA (879bp) protein (293aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=706434 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera micronuciformis F0359.;"
Shikimate/quinate 5-dehydrogenase I beta (EC:1.1.1.282)
Shikimate dehydrogenase n=1 Tax=Megasphaera micronuciformis F0359 RepID=E2Z9D3_9FIRM
L1_007_000M1_scaffold_65_18
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

22708..23454
DNA (747bp) protein (249aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
3-dehydroquinate dehydratase n=2 Tax=Megasphaera RepID=S7J4V6_9FIRM
3-dehydroquinate dehydratase
L1_007_000M1_scaffold_65_19
Megasphaera sp. BV3C16-1, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(23532..24863)
DNA (1332bp) protein (444aa)
Transporter, major facilitator family protein n=1 Tax=Megasphaera sp. BV3C16-1 RepID=U7UHR0_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERT57988.1}; TaxID=1111454 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. BV3C16-1.;"
d-galactonate transporter
L1_007_000M1_scaffold_65_20
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24967..26190)
DNA (1224bp) protein (408aa)
Arabinose efflux permease n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MWT0_9CLOT
arabinose efflux permease
Arabinose efflux permease {ECO:0000313|EMBL:AGF59036.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L1_007_000M1_scaffold_65_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26268..28196)
DNA (1929bp) protein (643aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS32_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFB74560.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
oxidoreductase
L1_007_000M1_scaffold_65_22
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28226..29095)
DNA (870bp) protein (290aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Shikimate dehydrogenase n=5 Tax=Clostridiales RepID=A5KQV2_9FIRM
aroD3; shikimate 5-dehydrogenase
L1_007_000M1_scaffold_65_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29132..29974)
DNA (843bp) protein (281aa)
AP endonuclease, family 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS30_9FIRM
AP endonuclease, family 2 {ECO:0000313|EMBL:EFB74558.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Xylose isomerase-like TIM barrel.
L1_007_000M1_scaffold_65_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30046..30909)
DNA (864bp) protein (288aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Shikimate dehydrogenase n=10 Tax=Clostridium difficile RepID=T2XGY7_CLODI
ydiB; shikimate 5-dehydrogenase
L1_007_000M1_scaffold_65_25
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31142..32026
DNA (885bp) protein (295aa)
LysR family transcriptional regulator transcription activator of glutamate synthase operon n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HDI8_9FIRM
LysR family transcriptional regulator transcription activator of glutamate synthase operon {ECO:0000313|EMBL:CDE37386.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
Transcriptional regulator
L1_007_000M1_scaffold_65_26
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(32234..32740)
DNA (507bp) protein (169aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
Shikimate kinase n=2 Tax=Megasphaera RepID=G0VLC0_MEGEL
shikimate kinase
L1_007_000M1_scaffold_65_27
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(32730..33563)
DNA (834bp) protein (278aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
Shikimate dehydrogenase n=2 Tax=Megasphaera RepID=S7HNM0_9FIRM
shikimate 5-dehydrogenase
L1_007_000M1_scaffold_65_28
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(33564..34415)
DNA (852bp) protein (284aa)
p-protein n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7MVF8_9FIRM
p-protein {ECO:0000313|EMBL:CDF05164.1}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
P-protein
L1_007_000M1_scaffold_65_29
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(34415..35509)
DNA (1095bp) protein (365aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
Chorismate synthase n=2 Tax=Megasphaera RepID=S7HNG4_9FIRM
chorismate synthase
L1_007_000M1_scaffold_65_30
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(35511..36797)
DNA (1287bp) protein (429aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=2 Tax=Megasphaera RepID=S7J563_9FIRM
3-phosphoshikimate 1-carboxyvinyltransferase
Displaying items 1-30 of 122 in total

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