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L1_007_000M1_scaffold_3016

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_3016_1
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..105)
DNA (105bp) protein (35aa)
Uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z4S1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM51971.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
L1_007_000M1_scaffold_3016_2
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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183..821
DNA (639bp) protein (213aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C4J3_9FIRM
L1_007_000M1_scaffold_3016_3
unknown

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818..1168
DNA (351bp) protein (117aa)

This feature has no annotations

L1_007_000M1_scaffold_3016_4
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1148..1492)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QSH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25171.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L1_007_000M1_scaffold_3016_5
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1672..1953
DNA (282bp) protein (94aa)
30S ribosomal protein S6 n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QW01_9FIRM
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
rpsF; 30S ribosomal protein S6
L1_007_000M1_scaffold_3016_6
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1971..2453
DNA (483bp) protein (161aa)
Single-stranded DNA-binding protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q9E2_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
single-strand binding protein
L1_007_000M1_scaffold_3016_7
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2471..2701
DNA (231bp) protein (77aa)
30S ribosomal protein S18 n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QFR9_9FIRM
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
SSU ribosomal protein S18P
L1_007_000M1_scaffold_3016_8
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2968..3240)
DNA (273bp) protein (91aa)
Transcriptional regulator, LysR family n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NWF4_9FIRM
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEF92493.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
LysR family transcriptional regulator
L1_007_000M1_scaffold_3016_9
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3452..3784
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Metascardovia criceti RepID=UPI00036C59BC
Uncharacterized protein {ECO:0000313|EMBL:CCZ32240.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
putative oxidoreductase
L1_007_000M1_scaffold_3016_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3878..4321
DNA (444bp) protein (148aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Clostridium RepID=B6FUT8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23433.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L1_007_000M1_scaffold_3016_11
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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4431..4805
DNA (375bp) protein (125aa)
Desulfoferrodoxin ferrous iron-binding domain n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GRU0_9FIRM
desulfoferrodoxin ferrous iron-binding domain
Desulfoferrodoxin ferrous iron-binding domain {ECO:0000313|EMBL:CBL40515.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L1_007_000M1_scaffold_3016_12
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4838..5857)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 8_2_54BFAA RepID=H1AQK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ45048.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
transcriptional regulator AraC family
L1_007_000M1_scaffold_3016_13
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5941..7059
DNA (1119bp) protein (373aa)
Uncharacterized protein n=3 Tax=Coprobacillus RepID=H1AQK7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ45047.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
major facilitator superfamily transporter
L1_007_000M1_scaffold_3016_14
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7334..7642)
DNA (309bp) protein (103aa)
Uncharacterized protein (Fragment) n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NWG9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF92434.1}; Flags: Fragment;; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
L1_007_000M1_scaffold_3016_15
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7971..9077
DNA (1107bp) protein (369aa)
Putative oxidoreductase of aldo/keto reductase family n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M1R9_CLOCD
oxidoreductase, aldo/keto reductase family protein
Oxidoreductase, aldo/keto reductase family protein {ECO:0000313|EMBL:CDZ25058.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L1_007_000M1_scaffold_3016_16
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9087..9806
DNA (720bp) protein (240aa)
UPI00031DAC1B related cluster n=1 Tax=unknown RepID=UPI00031DAC1B
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EJF39674.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
short-chain dehydrogenase/reductase SDR
L1_007_000M1_scaffold_3016_17
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9799..10614
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGB5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97981.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Aldo/keto reductase family
L1_007_000M1_scaffold_3016_18
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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10756..11010
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QPS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ24206.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
sugar-H+ symporter permease
L1_007_000M1_scaffold_3016_19
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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10988..11215
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:183 RepID=R5R596_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ35773.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
anion symport for sucrose, putative
Displaying 19 items

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