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L1_007_000M1_scaffold_3246

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_3246_1
unknown

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comp(2..109)
DNA (108bp) protein (36aa)

This feature has no annotations

L1_007_000M1_scaffold_3246_2
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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248..1081
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QRL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ23617.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L1_007_000M1_scaffold_3246_3
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1062..1529
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QN60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ23616.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L1_007_000M1_scaffold_3246_4
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1534..1728)
DNA (195bp) protein (65aa)
Putative small acid-soluble spore protein I n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q497_9FIRM
Putative small acid-soluble spore protein I {ECO:0000313|EMBL:CCZ23615.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
small, acid-soluble spore protein I
L1_007_000M1_scaffold_3246_5
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1877..2443
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QBD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ23614.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
zinc metalloprotease
L1_007_000M1_scaffold_3246_6
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2440..3156
DNA (717bp) protein (239aa)
RNA methyltransferase TrmH family n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q532_9FIRM
RNA methyltransferase TrmH family {ECO:0000313|EMBL:CCZ23613.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
RNA 2'-O ribose methyltransferase substrate binding family protein
L1_007_000M1_scaffold_3246_7
Catenibacterium sp. CAG:290, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3159..3929
DNA (771bp) protein (257aa)
Cof-like hydrolase n=1 Tax=Catenibacterium sp. CAG:290 RepID=R7GN56_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:CDE28476.1}; TaxID=1262767 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium; environmental samples.;" source="Catenibacterium sp. CAG:290.;"
HAD-superfamily hydrolase, subfamily IIB
L1_007_000M1_scaffold_3246_8
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3997..4710)
DNA (714bp) protein (238aa)
Sortase B cell surface sorting signal n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NW18_9FIRM
Sortase B cell surface sorting signal {ECO:0000313|EMBL:EEF92576.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
L1_007_000M1_scaffold_3246_9
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4952..6037
DNA (1086bp) protein (362aa)
SIS domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4H2_9FIRM
SIS domain protein {ECO:0000313|EMBL:EEF69152.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
sugar isomerase
L1_007_000M1_scaffold_3246_10
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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6047..6484
DNA (438bp) protein (146aa)
PTS system fructose IIA component n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET10_9FIRM
PTS system fructose IIA component {ECO:0000313|EMBL:EEQ61154.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
manX; PTS system, IIA component
L1_007_000M1_scaffold_3246_11
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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6499..6987
DNA (489bp) protein (163aa)
PTS system sorbose subfamily IIB component n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET11_9FIRM
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:EEQ61155.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
PTS system sorbose subfamily transporter subunit IIB
L1_007_000M1_scaffold_3246_12
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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7002..7787
DNA (786bp) protein (262aa)
PTS system sorbose-specific iic component n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET12_9FIRM
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EEQ61156.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
PTS sorbose-specific transporter subunit IIC
L1_007_000M1_scaffold_3246_13
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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7787..8626
DNA (840bp) protein (280aa)
PTS system, mannose/fructose/sorbose family, IID component n=1 Tax=Fusobacterium ulcerans 12-1B RepID=S2LQA8_9FUSO
PTS system, mannose/fructose/sorbose family, IID component {ECO:0000313|EMBL:EPC09183.1}; TaxID=457404 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans 12-1B.;"
levG; PTS system, mannose-specific enzyme II, D component
L1_007_000M1_scaffold_3246_14
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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8575..9732
DNA (1158bp) protein (386aa)
SIS domain protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET13_9FIRM
SIS domain protein {ECO:0000313|EMBL:EEQ61157.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
sugar isomerase
L1_007_000M1_scaffold_3246_15
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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9772..10539
DNA (768bp) protein (256aa)
Cof-like hydrolase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q7Q1_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:CCZ24775.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
cof family hydrolase
L1_007_000M1_scaffold_3246_16
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11182..11907)
DNA (726bp) protein (242aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET09_9FIRM
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EEQ61153.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
GntR family transcriptional regulator
L1_007_000M1_scaffold_3246_17
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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12282..13319
DNA (1038bp) protein (346aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
pheS; phenylalanyl-tRNA synthase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C2A7_9FIRM
L1_007_000M1_scaffold_3246_18
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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13324..15714
DNA (2391bp) protein (797aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
phenylalanyl-tRNA synthetase beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=3 Tax=Erysipelotrichaceae RepID=B0N0V5_9FIRM
L1_007_000M1_scaffold_3246_19
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(15756..16355)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q858_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ24915.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L1_007_000M1_scaffold_3246_20
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(16409..17020)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q858_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ24915.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L1_007_000M1_scaffold_3246_21
unknown

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comp(17017..17280)
DNA (264bp) protein (88aa)

This feature has no annotations

Displaying 21 items

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