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L1_007_000M1_scaffold_1023

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1023_1
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2..91
DNA (90bp) protein (30aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Thioredoxin reductase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q2U7_9FIRM
L1_007_000M1_scaffold_1023_2
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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100..1020
DNA (921bp) protein (307aa)
UPF0042 nucleotide-binding protein CLORAM_00485 n=4 Tax=Erysipelotrichaceae RepID=B0N1K0_9FIRM
Nucleotide-binding protein CLORAM_00485 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
ATPase P
L1_007_000M1_scaffold_1023_3
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1020..1970
DNA (951bp) protein (317aa)
Putative sporulation transcription regulator WhiA n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QMC1_9FIRM
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
hypothetical protein
L1_007_000M1_scaffold_1023_4
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1963..2181
DNA (219bp) protein (73aa)
DNA-binding helix-turn-helix protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q3F0_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCZ23335.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
hypothetical protein
L1_007_000M1_scaffold_1023_5
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2192..2476
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QAF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ23334.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L1_007_000M1_scaffold_1023_6
unknown

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2510..2659
DNA (150bp) protein (50aa)

This feature has no annotations

L1_007_000M1_scaffold_1023_7
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2822..3643
DNA (822bp) protein (274aa)
Lipoprotein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q488_9FIRM
Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
metQ; D-methionine-binding lipoprotein MetQ
L1_007_000M1_scaffold_1023_8
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3655..4137
DNA (483bp) protein (161aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QQN3_9FIRM
methionine-S-sulfoxide reductase
L1_007_000M1_scaffold_1023_9
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4151..5119
DNA (969bp) protein (323aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
ABC transporter ATP-binding protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QMB7_9FIRM
ABC transporter ATP-binding protein
L1_007_000M1_scaffold_1023_10
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5116..5751
DNA (636bp) protein (212aa)
ABC transporter permease protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q3E5_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CCZ23330.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
ABC transporter permease
L1_007_000M1_scaffold_1023_11
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5803..7155
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QAE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ23329.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L1_007_000M1_scaffold_1023_12
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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7219..8412
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q483_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ23328.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L1_007_000M1_scaffold_1023_13
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8422..9753
DNA (1332bp) protein (444aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QQM9_9FIRM
L1_007_000M1_scaffold_1023_14
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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9757..10383
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 8_2_54BFAA RepID=H1AJF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ46827.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
CHAP domain.
L1_007_000M1_scaffold_1023_15
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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10394..11434
DNA (1041bp) protein (347aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
D-alanine--D-alanine ligase n=5 Tax=Erysipelotrichaceae RepID=B0N933_9FIRM
D-alanine--D-alanine ligase
L1_007_000M1_scaffold_1023_16
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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11523..12359
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RMF9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ44629.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
transcriptional activator ramA
L1_007_000M1_scaffold_1023_17
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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12439..14001
DNA (1563bp) protein (521aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RMG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ31474.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
phospholipase/carboxylesterase
L1_007_000M1_scaffold_1023_18
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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14087..14929
DNA (843bp) protein (281aa)
rpiR3; glk-like protein (EC:2.7.1.2)
Transcriptional regulator, RpiR family n=4 Tax=Erysipelotrichaceae RepID=B0N4L8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ34994.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
L1_007_000M1_scaffold_1023_19
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15089..17548
DNA (2460bp) protein (820aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 8_2_54BFAA RepID=H1ARK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ44654.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
glycosyl hydrolase
L1_007_000M1_scaffold_1023_20
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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17665..20925
DNA (3261bp) protein (1087aa)
F5/8 type C domain protein n=2 Tax=Erysipelotrichaceae RepID=B0N4L9_9FIRM
F5/8 type C domain protein {ECO:0000313|EMBL:EDS18621.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
glycosyl hydrolase
L1_007_000M1_scaffold_1023_21
unknown

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21085..21555
DNA (471bp) protein (157aa)

This feature has no annotations

L1_007_000M1_scaffold_1023_22
unknown

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21676..21822
DNA (147bp) protein (49aa)

This feature has no annotations

L1_007_000M1_scaffold_1023_23
unknown

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21837..21965
DNA (129bp) protein (43aa)

This feature has no annotations

L1_007_000M1_scaffold_1023_24
unknown

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22193..22501
DNA (309bp) protein (103aa)

This feature has no annotations

L1_007_000M1_scaffold_1023_25
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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22670..23455
DNA (786bp) protein (262aa)
Transcriptional regulator, LacI family n=5 Tax=Erysipelotrichaceae RepID=B0N4Y9_9FIRM
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EDS18741.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
rpiR family phosphosugar-binding transcriptional regulator
L1_007_000M1_scaffold_1023_26
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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23564..25117
DNA (1554bp) protein (518aa)
Putative esterase n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N7U6_9FIRM
Putative esterase {ECO:0000313|EMBL:EDS17884.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
enterochelin esterase-like protein
L1_007_000M1_scaffold_1023_27
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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25578..27254
DNA (1677bp) protein (559aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
leuA1; 2-isopropylmalate synthase LeuA (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QQ07_9FIRM
L1_007_000M1_scaffold_1023_28
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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27268..27756
DNA (489bp) protein (163aa)
Acetolactate synthase small subunit n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QTF2_9FIRM
Acetolactate synthase small subunit {ECO:0000313|EMBL:CCZ24292.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
acetolactate synthase small subunit
L1_007_000M1_scaffold_1023_29
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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27771..27950
DNA (180bp) protein (60aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
ilvC; ketol-acid reductoisomerase IlvC (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C4Q3_9FIRM
L1_007_000M1_scaffold_1023_30
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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27995..28729
DNA (735bp) protein (245aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C4Q3_9FIRM
Displaying 30 items

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