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L1_007_000M1_scaffold_1022

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1022_1
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(305..856)
DNA (552bp) protein (184aa)
Fumarate hydratase subunit B n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TAS1_9FIRM
Fumarate hydratase subunit B {ECO:0000313|EMBL:CDC69335.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
fumarate hydratase subunit B
L1_007_000M1_scaffold_1022_2
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1011..1856)
DNA (846bp) protein (282aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region (EC:4.2.1.2)
Hydro-lyase Fe-S type tartrate/fumarate subfamily alpha subunit n=1 Tax=Eubacterium rectale CAG:36 RepID=R6UEV0_9FIRM
Hydro-lyase Fe-S type tartrate/fumarate subfamily alpha subunit {ECO:0000313|EMBL:CDC69332.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L1_007_000M1_scaffold_1022_3
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2114..4672)
DNA (2559bp) protein (853aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
DNA gyrase subunit A n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4Z942_EUBR3
DNA gyrase, A subunit
L1_007_000M1_scaffold_1022_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4691..6628)
DNA (1938bp) protein (646aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=4 Tax=Eubacterium RepID=C4Z941_EUBR3
L1_007_000M1_scaffold_1022_5
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6621..7709)
DNA (1089bp) protein (363aa)
DNA replication and repair protein RecF n=3 Tax=Eubacterium RepID=D4JNV3_9FIRM
recF protein
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_007_000M1_scaffold_1022_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7709..7924)
DNA (216bp) protein (72aa)
Uncharacterized conserved protein n=3 Tax=Eubacterium rectale RepID=D4JNV4_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBK94773.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_1022_7
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7933..9045)
DNA (1113bp) protein (371aa)
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
DNA polymerase III subunit beta n=3 Tax=Eubacterium RepID=C4Z938_EUBR3
L1_007_000M1_scaffold_1022_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9331..10692)
DNA (1362bp) protein (454aa)
Chromosomal replication initiator protein DnaA n=2 Tax=Eubacterium RepID=D4JNV6_9FIRM
chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_1022_9
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11130..11264
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=4 Tax=Eubacterium RepID=RL34_EUBR3
LSU ribosomal protein L34P
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_1022_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11323..11670
DNA (348bp) protein (116aa)
ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Ribonuclease P protein component n=4 Tax=Eubacterium RepID=C4ZFM9_EUBR3
L1_007_000M1_scaffold_1022_11
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11924..13240
DNA (1317bp) protein (439aa)
Membrane protein insertase, YidC/Oxa1 family, C-terminal domain n=1 Tax=Eubacterium rectale M104/1 RepID=D4JNV9_9FIRM
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
Membrane protein insertase, YidC/Oxa1 family, C-terminal domain {ECO:0000313|EMBL:CBK94778.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_1022_12
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13253..13879
DNA (627bp) protein (209aa)
Predicted RNA-binding protein Jag, SpoIIIJ-associated n=2 Tax=Eubacterium RepID=C4ZFM6_EUBR3
putative RNA-binding protein Jag, SpoIIIJ-associated
Predicted RNA-binding protein Jag SpoIIIJ-associated {ECO:0000313|EMBL:CDC69310.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L1_007_000M1_scaffold_1022_13
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13963..15339
DNA (1377bp) protein (459aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
tRNA modification GTPase MnmE n=1 Tax=Eubacterium rectale CAG:36 RepID=R6THW6_9FIRM
tRNA modification GTPase TrmE
L1_007_000M1_scaffold_1022_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15346..17286
DNA (1941bp) protein (647aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Eubacterium rectale M104/1 RepID=D4JNW1_9FIRM
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
glucose-inhibited division protein A
L1_007_000M1_scaffold_1022_15
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17303..18016
DNA (714bp) protein (238aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.- 2.1.-.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Eubacterium rectale CAG:36 RepID=R6UES2_9FIRM
L1_007_000M1_scaffold_1022_16
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18080..19030)
DNA (951bp) protein (317aa)
Alpha/beta hydrolase fold protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZFM2_EUBR3
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ACR77429.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L1_007_000M1_scaffold_1022_17
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19212..20255
DNA (1044bp) protein (348aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase. (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CBK92142.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6DZX9_9FIRM
L1_007_000M1_scaffold_1022_18
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20259..20903
DNA (645bp) protein (215aa)
Two-component response regulator (Extracellular proteinase response regulator) n=4 Tax=Eubacterium RepID=C4ZEG3_EUBR3
two-component response regulator (extracellular proteinase response regulator)
Two-component response regulator (Extracellular proteinase response regulator) {ECO:0000313|EMBL:ACR77426.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L1_007_000M1_scaffold_1022_19
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22953..23720
DNA (768bp) protein (256aa)
ATPases involved in chromosome partitioning n=3 Tax=Eubacterium RepID=D4JNW7_9FIRM
ATPases involved in chromosome partitioning
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:CDC69301.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L1_007_000M1_scaffold_1022_20
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23727..24617
DNA (891bp) protein (297aa)
Predicted transcriptional regulators n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TAN8_9FIRM
Predicted transcriptional regulators {ECO:0000313|EMBL:CDC69300.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Predicted transcriptional regulators
L1_007_000M1_scaffold_1022_21
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24745..25254
DNA (510bp) protein (170aa)
Uncharacterized protein n=4 Tax=Eubacterium RepID=R6T7A9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK94788.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_1022_22
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25274..26317
DNA (1044bp) protein (348aa)
HD-GYP domain n=1 Tax=Eubacterium rectale M104/1 RepID=D4JNX0_9FIRM
HD-GYP domain
HD-GYP domain {ECO:0000313|EMBL:CBK94789.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_1022_23
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26336..27211
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6THV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC69294.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
hypothetical protein
Displaying 23 items

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