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L1_007_000M1_scaffold_972

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_972_1
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1..600)
DNA (600bp) protein (200aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SL25_9FIRM
Chromosome partitioning protein ParA {ECO:0000313|EMBL:KGJ51546.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
ATPases involved in chromosome partitioning
L1_007_000M1_scaffold_972_2
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(725..994)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B3 RepID=R0BAI9_9CLOT
23S rRNA (uracil-5-)-methyltransferase RumA
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EGB91591.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L1_007_000M1_scaffold_972_3
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(957..2384)
DNA (1428bp) protein (476aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA m(5)U-1939 methyltransferase n=2 Tax=Eubacterium RepID=D4JHI9_9FIRM
23S rRNA m(5)U-1939 methyltransferase {ECO:0000313|EMBL:CDC74068.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L1_007_000M1_scaffold_972_4
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2496..3440)
DNA (945bp) protein (315aa)
HD-superfamily hydrolase n=3 Tax=Eubacterium RepID=C4ZI05_EUBR3
uncharacterized domain HDIG
HD-superfamily hydrolase {ECO:0000313|EMBL:CDC74071.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L1_007_000M1_scaffold_972_5
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3459..4727)
DNA (1269bp) protein (423aa)
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHJ1_9FIRM
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain {ECO:0000313|EMBL:CBK93088.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_972_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5279..7657
DNA (2379bp) protein (793aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Endonuclease MutS2 n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3Q0_9FIRM
MutS2 family protein
L1_007_000M1_scaffold_972_7
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7709..8410
DNA (702bp) protein (234aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=4 Tax=Eubacterium RepID=D4JHJ3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR76645.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L1_007_000M1_scaffold_972_8
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8414..9853
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Sensory transduction histidine kinase n=1 Tax=Eubacterium rectale CAG:36 RepID=R6UTQ2_9FIRM
sensory transduction histidine kinase
L1_007_000M1_scaffold_972_9
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10295..11335)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TL09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC74088.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
hypothetical protein
L1_007_000M1_scaffold_972_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11345..13141)
DNA (1797bp) protein (599aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:CBK90036.1}; EC=6.1.1.12 {ECO:0000313|EMBL:CBK90036.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Aspartate--tRNA ligase n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3P6_9FIRM
L1_007_000M1_scaffold_972_11
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13230..14489)
DNA (1260bp) protein (420aa)
Histidine--tRNA ligase n=3 Tax=Eubacterium RepID=C4ZI13_EUBR3
histidine--tRNA ligase
Histidine--tRNA ligase {ECO:0000313|EMBL:CDC74100.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L1_007_000M1_scaffold_972_12
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14870..16000)
DNA (1131bp) protein (377aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHJ8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK93095.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_972_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16644..18113)
DNA (1470bp) protein (490aa)
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2) n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3P3_9FIRM
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2) {ECO:0000313|EMBL:CBK90033.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_007_000M1_scaffold_972_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18187..18666)
DNA (480bp) protein (160aa)
PTS system IIA component, Glc family (TC 4.A.1) n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E3P2_9FIRM
PTS system IIA component, Glc family (TC 4.A.1)
PTS system IIA component, Glc family (TC 4.A.1) {ECO:0000313|EMBL:CBK90032.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_007_000M1_scaffold_972_15
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18660..19814)
DNA (1155bp) protein (385aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZI18_EUBR3
N-acetylglucosamine-6-phosphate deacetylase
L1_007_000M1_scaffold_972_16
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19844..20569)
DNA (726bp) protein (242aa)
glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Glucosamine-6-phosphate deaminase n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHK2_9FIRM
L1_007_000M1_scaffold_972_17
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21103..23610)
DNA (2508bp) protein (836aa)
Cysteine protease n=2 Tax=Eubacterium rectale RepID=D4JHK3_9FIRM
Cysteine protease
Cysteine protease {ECO:0000313|EMBL:CBK90029.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_007_000M1_scaffold_972_18
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23685..24203)
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=2 Tax=Eubacterium rectale RepID=D4JHK4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK90028.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L1_007_000M1_scaffold_972_19
Streptococcus sp. GMD4S, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24278..24733)
DNA (456bp) protein (152aa)
Serine/threonine protein kinase n=3 Tax=Streptococcus RepID=K0ZHA2_9STRE
Serine/threonine protein kinase {ECO:0000313|EMBL:EKA02677.1}; TaxID=1169673 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus sp. GMD4S.;"
L1_007_000M1_scaffold_972_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25098..25292)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99198.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Predicted ATPases
L1_007_000M1_scaffold_972_21
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25296..28556)
DNA (3261bp) protein (1087aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHK6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK93103.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_972_22
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29119..29457)
DNA (339bp) protein (113aa)
Plasmid stabilisation system protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6UTT0_9FIRM
Plasmid stabilisation system protein {ECO:0000313|EMBL:CDC74112.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Plasmid stabilisation system protein.
L1_007_000M1_scaffold_972_23
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29454..29762)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TPL6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC74115.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
addiction module antitoxin, RelB/DinJ family
L1_007_000M1_scaffold_972_24
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30057..30881)
DNA (825bp) protein (275aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHK9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK93106.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_972_25
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31076..31264)
DNA (189bp) protein (63aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHL0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK93107.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_972_26
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31840..32508)
DNA (669bp) protein (223aa)
TIGR02646 family protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AAN1_9CLOT
TIGR02646 family protein {ECO:0000313|EMBL:EMZ26412.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
hypothetical protein
L1_007_000M1_scaffold_972_27
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32495..33787)
DNA (1293bp) protein (431aa)
Predicted ATP-binding protein involved in virulence n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHL2_9FIRM
Predicted ATP-binding protein involved in virulence
Predicted ATP-binding protein involved in virulence {ECO:0000313|EMBL:CBK93109.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L1_007_000M1_scaffold_972_28
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33946..34791
DNA (846bp) protein (282aa)
Tyrosine recombinase XerC n=1 Tax=Eubacterium rectale M104/1 RepID=D4JHL3_9FIRM
Site-specific recombinase XerD
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Displaying 28 items

View Taxonomy