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L1_007_000M1_scaffold_3300

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_3300_1
unknown

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1..108
-----------------
DNA (108bp)
protein (36aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36E2E
L1_007_000M1_scaffold_3300_2
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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89..985
-----------------
DNA (897bp)
protein (299aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37811
Uncharacterized protein {ECO:0000313|EMBL:EWM53946.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
hypothetical protein
L1_007_000M1_scaffold_3300_3
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1004..1276
-----------------
DNA (273bp)
protein (91aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37810
Uncharacterized protein {ECO:0000313|EMBL:EWM53947.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
hypothetical protein
L1_007_000M1_scaffold_3300_4
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1361..2557
-----------------
DNA (1197bp)
protein (399aa)
DNA-cytosine methyltransferase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C3780F
Uncharacterized protein {ECO:0000313|EMBL:EWM53948.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Site-specific DNA methylase
L1_007_000M1_scaffold_3300_5
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2554..3447
-----------------
DNA (894bp)
protein (298aa)
DNA-cytosine methyltransferase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JNB2_CELLD
DNA-cytosine methyltransferase
DNA-cytosine methyltransferase {ECO:0000313|EMBL:ADZ83566.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L1_007_000M1_scaffold_3300_6
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3440..4579
-----------------
DNA (1140bp)
protein (380aa)
phosphoadenosine phosphosulfate reductase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C3780E
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes {ECO:0000313|EMBL:CBL18040.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_007_000M1_scaffold_3300_7
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4585..5436
-----------------
DNA (852bp)
protein (284aa)
Fibronectin type III domain protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UKW5_RUMA7
Uncharacterized protein {ECO:0000313|EMBL:EWM53949.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Fibronectin type III domain protein
L1_007_000M1_scaffold_3300_8
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5454..5972
-----------------
DNA (519bp)
protein (173aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36E2A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL18043.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L1_007_000M1_scaffold_3300_9
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5969..7990
-----------------
DNA (2022bp)
protein (674aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
Topoisomerase IA (EC:5.99.1.2)
DNA topoisomerase III n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36E29
L1_007_000M1_scaffold_3300_10
unknown

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7983..8288
-----------------
DNA (306bp)
protein (102aa)

This feature has no annotations

L1_007_000M1_scaffold_3300_11
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8281..8793
-----------------
DNA (513bp)
protein (171aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37809
Uncharacterized protein {ECO:0000313|EMBL:CDE82186.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L1_007_000M1_scaffold_3300_12
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8790..9479
-----------------
DNA (690bp)
protein (230aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36E27
Conserved domain protein {ECO:0000313|EMBL:CDE82185.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L1_007_000M1_scaffold_3300_13
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9568..11553
-----------------
DNA (1986bp)
protein (662aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37807
Uncharacterized protein {ECO:0000313|EMBL:CDE82184.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
Displaying 13 items

View Taxonomy