ggKbase home page

L1_007_000M1_scaffold_1270

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1270_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..1939)
DNA (1938bp) protein (646aa)
Putative carbohydrate-active enzyme n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THH8_9FIRM
Glycoside Hydrolase Family 5 protein {ECO:0000313|EMBL:CCO03822.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Glycoside Hydrolase Family 5 protein
L1_007_000M1_scaffold_1270_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2135..3412
DNA (1278bp) protein (426aa)
Putative carbohydrate-active enzyme n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U941_9FIRM
Glycoside Hydrolase Family 5 protein
Glycoside Hydrolase Family 5 protein {ECO:0000313|EMBL:CCO03823.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1270_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3606..4898
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1I9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67328.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Monovalent cation:proton antiporter 2 (CPA2) transporter family protein
L1_007_000M1_scaffold_1270_4
unknown

Not on your lists

comp(5102..5458)
DNA (357bp) protein (119aa)

This feature has no annotations

L1_007_000M1_scaffold_1270_5
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5467..6792)
DNA (1326bp) protein (442aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
xylA; xylose isomerase (EC:5.3.1.5)
Xylose isomerase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCA0_9FIRM
L1_007_000M1_scaffold_1270_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7860..8132
DNA (273bp) protein (91aa)
10 kDa chaperonin n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7W6_9FIRM
groES; Co-chaperonin GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1270_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8176..9819
DNA (1644bp) protein (548aa)
60 kDa chaperonin n=1 Tax=Ruminococcus albus 8 RepID=E9SGQ5_RUMAL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
groEL; Chaperonin GroEL
L1_007_000M1_scaffold_1270_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10201..10905
DNA (705bp) protein (235aa)
Two component transcriptional regulator winged helix family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG94_9FIRM
Two-component system transcriptional regulator
Two-component system transcriptional regulator {ECO:0000313|EMBL:CCO03828.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1270_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10898..12319
DNA (1422bp) protein (474aa)
Two-component system sensor histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CCO03829.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TB02_9FIRM
L1_007_000M1_scaffold_1270_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12329..13639
DNA (1311bp) protein (437aa)
Peptidase S1 and S6 chymotrypsin/Hap n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0B1_9FIRM
Putative serine protease
Putative serine protease {ECO:0000313|EMBL:CCO03830.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1270_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13899..14738)
DNA (840bp) protein (280aa)
Putative lipoprotein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7W0_9FIRM
Putative lipoprotein {ECO:0000313|EMBL:CDC66882.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L1_007_000M1_scaffold_1270_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15026..15472
DNA (447bp) protein (149aa)
Stage V sporulation protein AC n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG87_9FIRM
Stage V sporulation protein AC {ECO:0000313|EMBL:CDC66881.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Stage V sporulation protein AC
L1_007_000M1_scaffold_1270_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15599..16276)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3U6_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03833.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1270_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16282..17634)
DNA (1353bp) protein (451aa)
MATE efflux family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAZ8_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDC66879.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
multidrug resistance protein, MATE family, drug/sodium antiporter
L1_007_000M1_scaffold_1270_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17851..20313)
DNA (2463bp) protein (821aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0A3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66878.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative membrane protein
L1_007_000M1_scaffold_1270_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20325..20846)
DNA (522bp) protein (174aa)
Sigma-70 region 2 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7V4_9FIRM
sig3; RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CCO03836.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1270_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21080..22567)
DNA (1488bp) protein (496aa)
Membrane-flanked domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG82_9FIRM
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CCO03837.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1270_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22592..23047)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3U0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66875.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L1_007_000M1_scaffold_1270_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23190..24482
DNA (1293bp) protein (431aa)
Amino acid carrier protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAZ3_9FIRM
Na+ and/or H+ alanine and/or glycine symporter
Na+ and/or H+ alanine and/or glycine symporter {ECO:0000313|EMBL:CCO03839.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1270_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24913..25755)
DNA (843bp) protein (281aa)
fumA; Putative fumarate hydratase subunit alpha (EC:4.2.1.2)
Putative fumarate hydratase subunit alpha {ECO:0000313|EMBL:CCO03840.1}; EC=4.2.1.2 {ECO:0000313|EMBL:CCO03840.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Hydro-lyase Fe-S type tartrate/fumarate subfamily alpha subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T097_9FIRM
L1_007_000M1_scaffold_1270_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25758..26222)
DNA (465bp) protein (155aa)
CheW protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7U7_9FIRM
cheW1; Chemotaxis protein cheW
Chemotaxis protein cheW {ECO:0000313|EMBL:CCO03841.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1270_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26248..27237)
DNA (990bp) protein (330aa)
Protein-glutamate methylesterase {ECO:0000256|SAAS:SAAS00070601}; EC=3.1.1.61 {ECO:0000256|SAAS:SAAS00070601};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
cheB; Two-component system, chemotaxis family, response regulator CheB (EC:3.1.1.61)
CheB methylesterase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG77_9FIRM
L1_007_000M1_scaffold_1270_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27234..28070)
DNA (837bp) protein (279aa)
cheR; Chemotaxis protein methyltransferase CheR (EC:2.1.1.80)
Chemotaxis protein methyltransferase CheR {ECO:0000313|EMBL:CCO03843.1}; EC=2.1.1.80 {ECO:0000313|EMBL:CCO03843.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Methyltransferase CheR SAM binding domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3T5_9FIRM
L1_007_000M1_scaffold_1270_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28096..28539)
DNA (444bp) protein (148aa)
Chemotaxis protein CheW family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAY8_9FIRM
cheW2; Chemotaxis protein CheW
Chemotaxis protein CheW {ECO:0000313|EMBL:CCO03844.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1270_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28542..30638)
DNA (2097bp) protein (699aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
cheA; Two-component system, chemotaxis family, sensor kinase CheA (EC:2.7.13.3)
Putative chemotaxis protein CheA n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T091_9FIRM
Displaying 25 items

View Taxonomy