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L1_007_000M1_scaffold_1916

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1916_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..1257
DNA (1257bp) protein (419aa)
Putative LPXTG-motif protein cell wall anchor domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P3K0_9CLOT
Putative secreted protein
Putative secreted protein {ECO:0000313|EMBL:CCO03896.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1916_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1191..2855)
DNA (1665bp) protein (555aa)
Site-specific recombinases, DNA invertase Pin homologs n=2 Tax=Ruminococcus RepID=D4LEK4_RUMC1
Site-specific DNA recombinase
Site-specific DNA recombinase {ECO:0000313|EMBL:CCO03895.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1916_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2949..3146)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CND9_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03894.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1916_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3285..3683)
DNA (399bp) protein (133aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R6CCL2_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03893.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1916_5
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4631..5302
DNA (672bp) protein (224aa)
AT hook motif n=2 Tax=Ruminococcus RepID=D4LEK7_RUMC1
unnamed protein product
AT hook motif {ECO:0000313|EMBL:CDA74362.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
L1_007_000M1_scaffold_1916_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5299..6789
DNA (1491bp) protein (497aa)
Relaxase/Mobilisation nuclease domain n=2 Tax=Ruminococcus RepID=D4LEK8_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03890.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1916_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6808..7401
DNA (594bp) protein (198aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEK9_RUMC1
Transposon resolvase
Transposon resolvase {ECO:0000313|EMBL:CCO03889.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1916_8
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7639..8502)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C7X3_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CDA71615.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
L1_007_000M1_scaffold_1916_9
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8519..11836)
DNA (3318bp) protein (1106aa)
Lecithin:cholesterol acyltransferase n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CFC7_9FIRM
Lecithin:cholesterol acyltransferase {ECO:0000313|EMBL:CDA71614.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
Carbohydrate-Binding Module Family 3 protein
L1_007_000M1_scaffold_1916_10
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11871..12026)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6D1X3_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CDA71612.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
L1_007_000M1_scaffold_1916_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12180..12770)
DNA (591bp) protein (197aa)
Accessory gene regulator B n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6C7X0_9FIRM
Putative agrB-like protein
Putative agrB-like protein {ECO:0000313|EMBL:CCO03885.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_1916_12
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12889..13203)
DNA (315bp) protein (105aa)
Two-component system sensor histidine kinase (EC:2.7.13.3)
ATP-binding region ATPase domain protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CFC3_9FIRM
ATP-binding region ATPase domain protein {ECO:0000313|EMBL:CDA71609.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
L1_007_000M1_scaffold_1916_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13224..14084)
DNA (861bp) protein (287aa)
Two-component system sensor histidine kinase (EC:2.7.13.3)
Two-component system sensor histidine kinase {ECO:0000313|EMBL:CCO03884.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CCO03884.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATP-binding region ATPase domain protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CFC3_9FIRM
L1_007_000M1_scaffold_1916_14
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14081..14776)
DNA (696bp) protein (232aa)
Response regulator of the LytR/AlgR family n=2 Tax=Ruminococcus RepID=D4LEL2_RUMC1
Two-component system transcriptional regulator
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CDA71607.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
L1_007_000M1_scaffold_1916_15
unknown

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14897..15124
DNA (228bp) protein (76aa)

This feature has no annotations

L1_007_000M1_scaffold_1916_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15121..16977
DNA (1857bp) protein (619aa)
Putative LPXTG-motif protein cell wall anchor domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P3K0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCO03882.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein predicted by Glimmer/Critica
Displaying 16 items

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