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L1_007_000M1_scaffold_81

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_81_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(337..1434)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7E3_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04567.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_81_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1427..1930)
DNA (504bp) protein (168aa)
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZV1_9FIRM
sig10; RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000313|EMBL:CCO04566.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_81_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2040..2639)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAM2_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04565.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_81_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2667..3758)
DNA (1092bp) protein (364aa)
aroC; Chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000313|EMBL:CCO04564.1}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000313|EMBL:CCO04564.1};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Chorismate synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3G0_9FIRM
L1_007_000M1_scaffold_81_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3845..5074)
DNA (1230bp) protein (410aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CBX5_9FIRM
L1_007_000M1_scaffold_81_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5087..6196)
DNA (1110bp) protein (370aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7E7_9FIRM
L1_007_000M1_scaffold_81_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6246..6716)
DNA (471bp) protein (157aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZV5_9FIRM
uncharacterized conserved protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CCO04561.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_81_8
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6829..7851)
DNA (1023bp) protein (341aa)
aroF; 3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAM7_9FIRM
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:CDC66739.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_81_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8202..9464)
DNA (1263bp) protein (421aa)
GTPase HflX n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3G6_9FIRM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
GTPase
L1_007_000M1_scaffold_81_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9750..12086)
DNA (2337bp) protein (779aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CF96_9FIRM
Putative response regulator {ECO:0000313|EMBL:CCO04558.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
putative response regulator
L1_007_000M1_scaffold_81_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12170..14782)
DNA (2613bp) protein (871aa)
Cyclic diguanylate phosphodiesterase (EAL) domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZV8_9FIRM
Uncharacterized signaling protein {ECO:0000313|EMBL:CCO04557.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized signaling protein
L1_007_000M1_scaffold_81_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15016..17301
DNA (2286bp) protein (762aa)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:CCO04556.1}; EC=3.6.4.12 {ECO:0000313|EMBL:CCO04556.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.4.12)
ATP-dependent DNA helicase RecQ n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAN2_9FIRM
L1_007_000M1_scaffold_81_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17379..19052)
DNA (1674bp) protein (558aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3H0_9FIRM
Uncharacterized signaling protein {ECO:0000313|EMBL:CCO04555.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized signaling protein
L1_007_000M1_scaffold_81_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19206..20141)
DNA (936bp) protein (312aa)
Phosphoribulokinase/uridine kinase family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFT1_9FIRM
Phosphoribulokinase/uridine kinase family protein {ECO:0000313|EMBL:CDC66746.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L1_007_000M1_scaffold_81_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20234..21820)
DNA (1587bp) protein (529aa)
Putative ribonuclease n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7F5_9FIRM
Putative ribonuclease {ECO:0000313|EMBL:CCO04553.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
putative ribonuclease
L1_007_000M1_scaffold_81_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22030..22296
DNA (267bp) protein (89aa)
Sporulation transcriptional regulator SpoIIID n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZW2_9FIRM
spore_III_D; sporulation transcriptional regulator SpoIIID
Sporulation transcriptional regulator SpoIIID {ECO:0000313|EMBL:CCO04552.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_81_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22331..23800)
DNA (1470bp) protein (490aa)
Cation transport protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAN7_9FIRM
Cation transport protein {ECO:0000313|EMBL:CDC66749.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
trkH2; Trk system potassium uptake protein TrkH
L1_007_000M1_scaffold_81_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23811..25196)
DNA (1386bp) protein (462aa)
Potassium transporter peripheral membrane component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3H5_9FIRM
trkA2; Trk system potassium uptake protein trkA
Potassium transporter peripheral membrane component {ECO:0000313|EMBL:CDC66750.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_81_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25493..27751)
DNA (2259bp) protein (753aa)
ABC-type transport system involved in lipoprotein release permease component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFT7_9FIRM
ABC-type transport system involved in lipoprotein release permease component {ECO:0000313|EMBL:CDC66751.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ABC transporter permease
L1_007_000M1_scaffold_81_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27763..28467)
DNA (705bp) protein (235aa)
ABC-type antimicrobial peptide transport system ATPase component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7F9_9FIRM
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCO04548.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_81_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28639..29016)
DNA (378bp) protein (126aa)
Iron dependent repressor N-terminal DNA binding domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZW6_9FIRM
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:CCO04547.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_81_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29051..29209)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAP1_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04546.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_81_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29261..31750)
DNA (2490bp) protein (830aa)
Ferrous iron transporter FeoB n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3I0_9FIRM
Ferrous iron transporter FeoB {ECO:0000313|EMBL:CDC66755.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
feoB; Ferrous iron transport protein B
L1_007_000M1_scaffold_81_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31854..32075)
DNA (222bp) protein (74aa)
Fe2+ transport system protein A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFU2_9FIRM
feoA3; Ferrous iron transport protein A
Fe2+ transport system protein A {ECO:0000313|EMBL:CDC66756.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_81_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32145..32357)
DNA (213bp) protein (71aa)
Fe2+ transport system protein A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7G2_9FIRM
feoA2; Ferrous iron transport protein A
Fe2+ transport system protein A {ECO:0000313|EMBL:CDC66757.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_81_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32654..33061)
DNA (408bp) protein (136aa)
Flavodoxin n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZX0_9FIRM
fld; Flavodoxin
Flavodoxin {ECO:0000313|EMBL:CCO04542.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_81_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33074..33646)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAP6_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC66759.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_81_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33690..33989)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3I5_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04540.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_81_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34361..34969)
DNA (609bp) protein (203aa)
thrH; phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein (EC:3.1.3.3)
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein {ECO:0000313|EMBL:CCO04539.1}; EC=3.1.3.3 {ECO:0000313|EMBL:CCO04539.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFV0_9FIRM
L1_007_000M1_scaffold_81_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35205..35924
DNA (720bp) protein (240aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7G6_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDC66762.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
Displaying items 1-30 of 104 in total

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