ggKbase home page

L1_007_000M1_scaffold_87

Search features with annotation key words

Displaying items 31-60 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_87_31
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34915..35709)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCD5_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03789.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_87_32
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35745..36224)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1N0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67363.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L1_007_000M1_scaffold_87_33
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36316..37077)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U983_9FIRM
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CCO03787.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_87_34
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37256..38086)
DNA (831bp) protein (277aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
punA; Purine-nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THL4_9FIRM
L1_007_000M1_scaffold_87_35
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38101..41076)
DNA (2976bp) protein (992aa)
Binding-protein-dependent transport system putative ATPase component (EC:3.6.3.-)
Binding-protein-dependent transport system putative ATPase component {ECO:0000313|EMBL:CCO03785.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCO03785.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T556_9FIRM
L1_007_000M1_scaffold_87_36
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41095..42147)
DNA (1053bp) protein (351aa)
Efflux transporter RND family MFP subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCD0_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03784.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_87_37
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42406..43455)
DNA (1050bp) protein (350aa)
ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1M4_9FIRM
Binding-protein-dependent transport system membrane component
Binding-protein-dependent transport system membrane component {ECO:0000313|EMBL:CCO03783.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_87_38
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43468..44550)
DNA (1083bp) protein (361aa)
ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U976_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDC67357.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Binding-protein-dependent transport system membrane component
L1_007_000M1_scaffold_87_39
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44550..47027)
DNA (2478bp) protein (826aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67356.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L1_007_000M1_scaffold_87_40
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(47054..47683)
DNA (630bp) protein (210aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T552_9FIRM
hypothetical protein predicted by Glimmer/Critica
Conserved domain protein {ECO:0000313|EMBL:CDC67355.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_87_41
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(47685..49265)
DNA (1581bp) protein (527aa)
Tetratricopeptide repeat protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCC6_9FIRM
Tetratricopeptide repeat protein {ECO:0000313|EMBL:CDC67354.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L1_007_000M1_scaffold_87_42
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(49337..50239)
DNA (903bp) protein (301aa)
ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1L9_9FIRM
Binding-protein-dependent transport systems inner membrane component
ABC transporter permease protein {ECO:0000313|EMBL:CDC67353.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_87_43
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(50258..51196)
DNA (939bp) protein (313aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U970_9FIRM
Binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CCO03777.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_87_44
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51214..54168)
DNA (2955bp) protein (985aa)
Extracellular solute-binding protein family 1 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THK4_9FIRM
Extracellular solute-binding protein family 1
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CCO03776.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_87_45
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(54312..55259)
DNA (948bp) protein (316aa)
ABC transporter ATPase component (EC:3.6.3.-)
ABC transporter ATPase component {ECO:0000313|EMBL:CCO03775.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCO03775.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Putative lipoprotein ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T548_9FIRM
L1_007_000M1_scaffold_87_46
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(55252..55995)
DNA (744bp) protein (248aa)
ABC transporter ATPase component (EC:3.6.3.-)
ABC transporter related protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCC1_9FIRM
ABC transporter related protein {ECO:0000313|EMBL:CDC67349.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_87_47
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

56740..58203
DNA (1464bp) protein (488aa)
Serine protease Do-like protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1L3_9FIRM
Serine protease Do-like protein {ECO:0000313|EMBL:CDC67348.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Putative serine protease
L1_007_000M1_scaffold_87_48
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

58423..58791
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U964_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67347.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L1_007_000M1_scaffold_87_49
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

58793..60010
DNA (1218bp) protein (406aa)
Aspartate aminotransferase (EC:2.6.1.1)
Aminotransferase class I/II n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THK0_9FIRM
Aminotransferase class I/II {ECO:0000313|EMBL:CDC67346.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_87_50
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

60092..60862
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T544_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67345.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L1_007_000M1_scaffold_87_51
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(61016..62338)
DNA (1323bp) protein (441aa)
ABC-2 type transporter n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCB5_9FIRM
ABC transporter membrane component
ABC transporter membrane component {ECO:0000313|EMBL:CCO03768.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_87_52
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(62325..63065)
DNA (741bp) protein (247aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1K5_9FIRM
ABC transporter ATPase component
ABC transporter ATPase component {ECO:0000313|EMBL:CCO03767.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_87_53
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

63781..65415
DNA (1635bp) protein (545aa)
Endoglucanase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U957_9FIRM
Endoglucanase {ECO:0000313|EMBL:CDC67342.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Glycoside Hydrolase Family 5 protein
L1_007_000M1_scaffold_87_54
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(65552..66523)
DNA (972bp) protein (324aa)
cobD; Adenosylcobinamide-phosphate synthase CobD (EC:6.3.1.10)
Cobalamin biosynthesis protein CobD n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THJ5_9FIRM
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_87_55
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(66747..67808)
DNA (1062bp) protein (354aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hisC; Histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T540_9FIRM
L1_007_000M1_scaffold_87_56
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(67899..70028)
DNA (2130bp) protein (710aa)
Sigma-70 region 2 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCB0_9FIRM
sig2; RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000313|EMBL:CCO03763.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_87_57
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(70265..72028)
DNA (1764bp) protein (588aa)
Sigma-70 region 2 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1K0_9FIRM
sig1; RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000313|EMBL:CCO03762.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_87_58
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(72170..72784)
DNA (615bp) protein (205aa)
Radical SAM domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U952_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:CDC67337.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L1_007_000M1_scaffold_87_59
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(72919..74172)
DNA (1254bp) protein (418aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
proA; Gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THJ0_9FIRM
L1_007_000M1_scaffold_87_60
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(74178..75014)
DNA (837bp) protein (279aa)
proB; gamma-glutamyl kinase (EC:2.7.2.11)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Glutamate 5-kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T537_9FIRM
Displaying items 31-60 of 98 in total

View Taxonomy