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L1_007_000M1_scaffold_233

Search features with annotation key words

Displaying items 1-30 of 92 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_233_1
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

76..399
DNA (324bp) protein (108aa)
DNA-binding helix-turn-helix protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FYV6_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDE19836.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
XRE family transcriptional regulator
L1_007_000M1_scaffold_233_2
unknown

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405..659
DNA (255bp) protein (85aa)

This feature has no annotations

L1_007_000M1_scaffold_233_3
unknown

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662..949
DNA (288bp) protein (96aa)

This feature has no annotations

L1_007_000M1_scaffold_233_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1411..2934)
DNA (1524bp) protein (508aa)
xylB; Xylulokinase (EC:2.7.1.17)
Xylulokinase {ECO:0000313|EMBL:CCO05434.1}; EC=2.7.1.17 {ECO:0000313|EMBL:CCO05434.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Xylulokinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFP8_9FIRM
L1_007_000M1_scaffold_233_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3180..3359)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7D5_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05433.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_233_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3738..4820
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
serC; phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZU1_9FIRM
L1_007_000M1_scaffold_233_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4854..6005
DNA (1152bp) protein (384aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:CCO05431.1}; EC=1.1.1.95 {ECO:0000313|EMBL:CCO05431.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3E9_9FIRM
L1_007_000M1_scaffold_233_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6125..6418
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFQ5_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05430.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_233_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6492..6977)
DNA (486bp) protein (162aa)
GtrA-like protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TIX0_9FIRM
GtrA-like protein {ECO:0000313|EMBL:CDC67801.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative cell wall teichoic acid glycosylation protein
L1_007_000M1_scaffold_233_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7187..8455
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UAI2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05428.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_233_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8448..8951
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Y2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67803.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L1_007_000M1_scaffold_233_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9055..9888
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K2H3_9CLOT
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05426.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_233_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9933..10475)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T6G8_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05425.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_233_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10486..11871)
DNA (1386bp) protein (462aa)
Putative efflux protein MATE family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TIX5_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDC67806.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
multidrug resistance protein, MATE family, drug/sodium antiporter
L1_007_000M1_scaffold_233_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12359..14932
DNA (2574bp) protein (858aa)
Cation-transporting ATPase (EC:3.6.3.-)
Putative potassium/sodium efflux P-type ATPase fungal-type n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UAI7_9FIRM
Putative potassium/sodium efflux P-type ATPase fungal-type {ECO:0000313|EMBL:CDC67807.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_233_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15037..15555)
DNA (519bp) protein (173aa)
nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Y8_9FIRM
L1_007_000M1_scaffold_233_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15811..17985)
DNA (2175bp) protein (725aa)
nrdD; anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CCO05421.1}; EC=1.17.4.2 {ECO:0000313|EMBL:CCO05421.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Ribonucleoside-triphosphate reductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDN3_9FIRM
L1_007_000M1_scaffold_233_18
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(18521..19990)
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YQC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD30791.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
transcriptional regulator, XRE family
L1_007_000M1_scaffold_233_19
unknown

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comp(20017..20664)
DNA (648bp) protein (216aa)
CI; Putative bacteriophage repressor protein CI
L1_007_000M1_scaffold_233_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20895..21086
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MS64_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03948.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_233_21
unknown

Not on your lists

21249..21416
DNA (168bp) protein (56aa)

This feature has no annotations

L1_007_000M1_scaffold_233_22
Peptoniphilus sp. BV3C26, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21420..21938
DNA (519bp) protein (173aa)
Phage protein n=1 Tax=Clostridium botulinum Af84 RepID=S8BPU4_CLOBO
Uncharacterized protein {ECO:0000313|EMBL:ERT57747.1}; TaxID=1111134 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. BV3C26.;"
phage protein
L1_007_000M1_scaffold_233_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21949..23790
DNA (1842bp) protein (614aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SWZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC65723.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L1_007_000M1_scaffold_233_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23955..24842
DNA (888bp) protein (296aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LC66_RUMC1
sig4; RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CCO03944.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_233_25
unknown

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comp(24895..25170)
DNA (276bp) protein (92aa)

This feature has no annotations

L1_007_000M1_scaffold_233_26
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25352..25537
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QRK7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC39243.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L1_007_000M1_scaffold_233_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25700..26506
DNA (807bp) protein (269aa)
Abortive infection bacteriophage resistance protein n=1 Tax=Brachyspira pilosicoli B2904 RepID=J9UXL9_BRAPL
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03938.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_233_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26503..26646
DNA (144bp) protein (48aa)
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03938.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_233_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27259..28212
DNA (954bp) protein (318aa)
CobW/P47K family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T6H2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05381.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_233_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28558..29214
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TIY0_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC67811.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Displaying items 1-30 of 92 in total

View Taxonomy