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L1_007_000M1_scaffold_377

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_377_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(397..2679)
DNA (2283bp) protein (761aa)
site-specific DNA recombinase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C378F9
recombinase
Recombinase {ECO:0000313|EMBL:CCO06177.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_377_2
unknown

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comp(2807..3022)
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036971C4
L1_007_000M1_scaffold_377_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3652..4686)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus 8 RepID=E9S9A6_RUMAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04307.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_377_4
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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comp(4992..8093)
DNA (3102bp) protein (1034aa)
Restriction endonuclease (EC:3.1.21.5)
Restriction endonuclease n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S035_9FIRM
Restriction endonuclease {ECO:0000313|EMBL:CCZ46835.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
L1_007_000M1_scaffold_377_5
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8106..8816)
DNA (711bp) protein (237aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L963_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL16158.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_377_6
Alistipes sp. CAG:435, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(8816..10804)
DNA (1989bp) protein (663aa)
Type III restriction system methyltransferase n=1 Tax=Alistipes sp. CAG:435 RepID=R6X170_9BACT
Type III restriction system methyltransferase {ECO:0000313|EMBL:CDD15310.1}; TaxID=1262695 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:435.;"
putative modification enzyme of type III restriction-modification system
L1_007_000M1_scaffold_377_7
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10805..11410)
DNA (606bp) protein (202aa)
Tax=BJP_IG2157_Clostridiales_52_13
L1_007_000M1_scaffold_377_8
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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comp(11394..12017)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S1B5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ46838.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L1_007_000M1_scaffold_377_9
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12027..15968)
DNA (3942bp) protein (1314aa)
Superfamily II DNA/RNA helicases SNF2 family n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SJA6_9FIRM
Superfamily II DNA/RNA helicases SNF2 family {ECO:0000313|EMBL:CDC46697.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Superfamily II DNA/RNA helicases, SNF2 family
L1_007_000M1_scaffold_377_10
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15965..16201)
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HDK6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF00490.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
hypothetical protein
L1_007_000M1_scaffold_377_11
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16682..17026
DNA (345bp) protein (115aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CAQ5_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDA73673.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
AraC-type DNA-binding domain-containing proteins
L1_007_000M1_scaffold_377_12
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17143..19875)
DNA (2733bp) protein (911aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CLH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA73674.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
Uncharacterized conserved protein (DUF2075)./Protein of unknown function (DUF2726)./Viral (Superfamily 1) RNA helicase.
L1_007_000M1_scaffold_377_13
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20104..20850)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CDH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA73675.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
conserved hypothetical protein
L1_007_000M1_scaffold_377_14
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20844..21794)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CQB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA73676.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
conserved hypothetical protein
L1_007_000M1_scaffold_377_15
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21892..22068)
DNA (177bp) protein (59aa)
Stage V sporulation protein T n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6D722_9FIRM
Stage V sporulation protein T {ECO:0000313|EMBL:CDA73677.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein
L1_007_000M1_scaffold_377_16
unknown

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comp(22225..22584)
DNA (360bp) protein (120aa)

This feature has no annotations

L1_007_000M1_scaffold_377_17
Caldicellulosiruptor bescii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(22660..24672)
DNA (2013bp) protein (671aa)
KWG Leptospira repeat protein n=1 Tax=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) RepID=B9MQ41_CALBD
KWG repeat-containing protein
KWG Leptospira repeat protein {ECO:0000313|EMBL:ACM59833.1}; TaxID=521460 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320); (Anaerocellum thermophilum).;"
L1_007_000M1_scaffold_377_18

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comp(24773..25072)
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEP4_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61798.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
zinc-ribbon domain protein
L1_007_000M1_scaffold_377_19
unknown

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comp(25085..25627)
DNA (543bp) protein (181aa)

This feature has no annotations

L1_007_000M1_scaffold_377_20

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comp(25639..25929)
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEP4_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61798.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
zinc-ribbon domain protein
L1_007_000M1_scaffold_377_21
unknown

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comp(25957..26472)
DNA (516bp) protein (172aa)

This feature has no annotations

L1_007_000M1_scaffold_377_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26762..28243)
DNA (1482bp) protein (494aa)
aldehyde dehydrogenase (EC:1.2.1.-)
Aldehyde dehydrogenase {ECO:0000313|EMBL:CCO06195.1}; EC=1.2.1.- {ECO:0000313|EMBL:CCO06195.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:274 PF3_9FIRM">RepID=R6PPF3_9FIRM
L1_007_000M1_scaffold_377_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28268..29398)
DNA (1131bp) protein (377aa)
Alcohol dehydrogenase, iron-type (EC:1.1.1.-)
Alcohol dehydrogenase, iron-type {ECO:0000313|EMBL:CCO06196.1}; EC=1.1.1.- {ECO:0000313|EMBL:CCO06196.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0L7_9FIRM
L1_007_000M1_scaffold_377_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29427..30791)
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SX37_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06197.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_377_25
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30917..32113)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KGX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN33136.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
transcriptional regulator
L1_007_000M1_scaffold_377_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32177..33079)
DNA (903bp) protein (301aa)
speB4; Agmatinase (EC:3.5.3.11)
Agmatinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SX32_9FIRM
Agmatinase {ECO:0000313|EMBL:CDC65768.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_377_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33099..33761)
DNA (663bp) protein (221aa)
Kynurenine formamidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U4L5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06201.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_377_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(33777..35099)
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TD19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC65766.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L1_007_000M1_scaffold_377_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(35114..36187)
DNA (1074bp) protein (358aa)
ABC transporter solute-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0K8_9FIRM
ABC transporter solute-binding protein {ECO:0000313|EMBL:CDC65765.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
potD; Spermidine/putrescine extracellular binding protein
L1_007_000M1_scaffold_377_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(36189..36971)
DNA (783bp) protein (261aa)
Putative spermidine/putrescine ABC transporter permease component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T7P9_9FIRM
potC; spermidine/putrescine ABC transporter membrane protein
Spermidine/putrescine ABC transporter membrane protein {ECO:0000313|EMBL:CCO06204.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying items 1-30 of 43 in total

View Taxonomy