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L1_007_000M1_scaffold_4008

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_4008_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..1188)
DNA (1188bp) protein (396aa)
Formate C-acetyltransferase {ECO:0000313|EMBL:EFB76214.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EFB76214.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
formate acetyltransferase 1 (EC:2.3.1.54)
Formate C-acetyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNS9_9FIRM
L1_007_000M1_scaffold_4008_2
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1443..2738)
DNA (1296bp) protein (432aa)
enolase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
Enolase n=3 Tax=Clostridiales RepID=D4LPJ8_9FIRM
L1_007_000M1_scaffold_4008_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3197..4531)
DNA (1335bp) protein (445aa)
Amino acid carrier protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIG3_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:EFB77548.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative sodium/amino acid symporter
L1_007_000M1_scaffold_4008_4
unknown

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4758..4943
DNA (186bp) protein (62aa)

This feature has no annotations

L1_007_000M1_scaffold_4008_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5468..7231)
DNA (1764bp) protein (588aa)
GTP-binding protein TypA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ20_9FIRM
GTP-binding protein TypA {ECO:0000313|EMBL:EFB75212.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
GTP-binding protein TypA/BipA
L1_007_000M1_scaffold_4008_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7505..9160
DNA (1656bp) protein (552aa)
inorganic diphosphatase (EC:3.6.1.1)
DRTGG domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ19_9FIRM
DRTGG domain protein {ECO:0000313|EMBL:EFB75211.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_4008_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10054..11052)
DNA (999bp) protein (333aa)
Acyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNZ1_9FIRM
Acyltransferase {ECO:0000313|EMBL:EFB75487.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_4008_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11054..11533)
DNA (480bp) protein (160aa)
Putative small multi-drug export protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNT1_9FIRM
Putative small multi-drug export protein {ECO:0000313|EMBL:EFB76216.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
small multi-drug export
L1_007_000M1_scaffold_4008_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11818..12945)
DNA (1128bp) protein (376aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
N-acetylglucosamine 6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG4_9FIRM
L1_007_000M1_scaffold_4008_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12965..13648)
DNA (684bp) protein (228aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG3_9FIRM
L1_007_000M1_scaffold_4008_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13854..15221)
DNA (1368bp) protein (456aa)
Putative PTS system, N-acetylglucosamine-specific IIBC component n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG2_9FIRM
Putative PTS system, N-acetylglucosamine-specific IIBC component {ECO:0000313|EMBL:EFB76096.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
L1_007_000M1_scaffold_4008_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15541..15906)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75282.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized protein with conserved CXXC pairs
L1_007_000M1_scaffold_4008_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15909..17162)
DNA (1254bp) protein (418aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPT5_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFB75281.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
sarcosine oxidase subunit alpha
L1_007_000M1_scaffold_4008_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17178..18617)
DNA (1440bp) protein (480aa)
FAD dependent oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPT4_9FIRM
FAD dependent oxidoreductase {ECO:0000313|EMBL:EFB75280.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted dehydrogenase
L1_007_000M1_scaffold_4008_15
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18810..20312)
DNA (1503bp) protein (501aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PZW5_9FIRM
L1_007_000M1_scaffold_4008_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20515..21285)
DNA (771bp) protein (257aa)
Phosphoribosyl transferase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL61_9FIRM
Phosphoribosyl transferase domain protein {ECO:0000313|EMBL:EFB76719.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted amidophosphoribosyltransferases
L1_007_000M1_scaffold_4008_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21272..22606)
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CPJ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32787.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
diguanylate cyclase (GGDEF) domain
Displaying 17 items

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