ggKbase home page

L1_007_000M1_scaffold_3271

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_3271_1

Not on your lists

comp(1..132)
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SH74_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC46711.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_3271_2

Not on your lists

946..1593
DNA (648bp) protein (216aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA9_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61663.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ABC-type oligopeptide transport system, periplasmic component
L1_007_000M1_scaffold_3271_3

Not on your lists

comp(1803..2789)
DNA (987bp) protein (329aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEB0_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61664.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L1_007_000M1_scaffold_3271_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2932..4176
DNA (1245bp) protein (415aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA polymerase IV n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR84_9FIRM
DNA-directed DNA polymerase
L1_007_000M1_scaffold_3271_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4324..4704
DNA (381bp) protein (127aa)
Transcriptional regulator, GntR family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSA2_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EFB74387.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
GntR family transcriptional regulator
L1_007_000M1_scaffold_3271_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4767..5537
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSA1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74386.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_3271_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5556..6980
DNA (1425bp) protein (475aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74385.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_3271_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6977..7696
DNA (720bp) protein (240aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS98_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB74383.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC transporter
L1_007_000M1_scaffold_3271_9
unknown

Not on your lists

comp(7736..8326)
DNA (591bp) protein (197aa)

This feature has no annotations

L1_007_000M1_scaffold_3271_10
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

Not on your lists

comp(8323..8883)
DNA (561bp) protein (187aa)
Putative RNA polymerase sigma factor (ECF subfamily) n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J0X5_9FIRM
Putative RNA polymerase sigma factor (ECF subfamily) {ECO:0000313|EMBL:CCY42661.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L1_007_000M1_scaffold_3271_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8988..9929)
DNA (942bp) protein (314aa)
CorA-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRL8_9FIRM
CorA-like protein {ECO:0000313|EMBL:EFB74666.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Mg2+ and Co2+ transporter
Displaying 11 items

View Taxonomy