ggKbase home page

L1_007_000M1_scaffold_3463

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_3463_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..1158
DNA (1158bp) protein (386aa)
Formate C-acetyltransferase {ECO:0000313|EMBL:EFB76214.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EFB76214.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
formate acetyltransferase 1 (EC:2.3.1.54)
Formate C-acetyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNS9_9FIRM
L1_007_000M1_scaffold_3463_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1474..2235
DNA (762bp) protein (254aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pyruvate formate-lyase 1-activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase 1-activating enzyme n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNS8_9FIRM
L1_007_000M1_scaffold_3463_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2615..3604)
DNA (990bp) protein (330aa)
Oxidoreductase, aldo/keto reductase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRJ8_9FIRM
Oxidoreductase, aldo/keto reductase family protein {ECO:0000313|EMBL:EFB74724.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
L1_007_000M1_scaffold_3463_4

Not on your lists

3790..4248
DNA (459bp) protein (153aa)
Transcriptional regulator, MarR family (Fragment) n=2 Tax=human gut metagenome RepID=K1S008_9ZZZZ
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EKC54137.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_3463_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4426..5772
DNA (1347bp) protein (449aa)
MATE efflux family protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RRF6_9FIRM
Multidrug transporter MatE {ECO:0000313|EMBL:KJF39977.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Na+-driven multidrug efflux pump
L1_007_000M1_scaffold_3463_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5931..6506)
DNA (576bp) protein (192aa)
ANTAR domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR80_9FIRM
ANTAR domain protein {ECO:0000313|EMBL:EFB74782.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Response regulator with putative antiterminator output domain
L1_007_000M1_scaffold_3463_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6697..8007)
DNA (1311bp) protein (437aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR79_9FIRM
L1_007_000M1_scaffold_3463_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8456..10546)
DNA (2091bp) protein (697aa)
Glutamate--ammonia ligase, catalytic domain protein {ECO:0000313|EMBL:EFB74779.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EFB74779.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized protein related to glutamine synthetase (EC:6.3.1.2)
Glutamate--ammonia ligase, catalytic domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR77_9FIRM
L1_007_000M1_scaffold_3463_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10976..11461
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74776.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_3463_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11661..13064
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74774.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Protein of unknown function (DUF3048).
L1_007_000M1_scaffold_3463_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13131..14561
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74773.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Protein of unknown function (DUF3048).
L1_007_000M1_scaffold_3463_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14693..15328)
DNA (636bp) protein (212aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73)
Phosphoglycerate mutase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR70_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EFB74772.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_3463_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15709..16407
DNA (699bp) protein (233aa)
DNA-binding helix-turn-helix protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR68_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFB74770.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted transcriptional regulators
L1_007_000M1_scaffold_3463_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16488..16736)
DNA (249bp) protein (83aa)
Transcriptional regulator, AbrB family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR67_9FIRM
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:EFB74769.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator, AbrB family
L1_007_000M1_scaffold_3463_15

Not on your lists

comp(17032..17442)
DNA (411bp) protein (137aa)
N-formylmethionyl-tRNA deformylase n=1 Tax=human gut metagenome RepID=K1TF33_9ZZZZ
N-formylmethionyl-tRNA deformylase {ECO:0000313|EMBL:EKC68388.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
N-formylmethionyl-tRNA deformylase
L1_007_000M1_scaffold_3463_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17511..17711)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74713.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying 16 items

View Taxonomy