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L1_007_000M1_scaffold_1237

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1237_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..841
-----------------
DNA (840bp)
protein (280aa)
glutaconyl-CoA decarboxylase beta subunit (EC:4.1.1.3 4.1.1.70)
Sodium ion-translocating decarboxylase, beta subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSP5_9FIRM
Sodium ion-translocating decarboxylase, beta subunit {ECO:0000313|EMBL:EFB74278.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1237_2
unknown

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comp(1205..1888)
-----------------
DNA (684bp)
protein (228aa)

This feature has no annotations

L1_007_000M1_scaffold_1237_3
unknown

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comp(1892..2251)
-----------------
DNA (360bp)
protein (120aa)

This feature has no annotations

L1_007_000M1_scaffold_1237_4
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2255..2743)
-----------------
DNA (489bp)
protein (163aa)
Sigma-70 region 2 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AMK4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJF38395.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
L1_007_000M1_scaffold_1237_5

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3097..3987
-----------------
DNA (891bp)
protein (297aa)
Metal-dependent hydrolases of the beta-lactamase superfamily III (EC:3.1.26.11)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA3_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61657.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L1_007_000M1_scaffold_1237_6

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3984..4316
-----------------
DNA (333bp)
protein (111aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA2_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61656.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
L1_007_000M1_scaffold_1237_7

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4422..4922
-----------------
DNA (501bp)
protein (167aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEA1_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61655.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L1_007_000M1_scaffold_1237_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5124..6257
-----------------
DNA (1134bp)
protein (378aa)
Exonuclease SbcCD, D subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQD5_9FIRM
Exonuclease SbcCD, D subunit {ECO:0000313|EMBL:EFB75092.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
exonuclease SbcD
L1_007_000M1_scaffold_1237_9

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6254..8749
-----------------
DNA (2496bp)
protein (832aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZE99_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61653.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ATPase involved in DNA repair
L1_007_000M1_scaffold_1237_10

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8929..10332
-----------------
DNA (1404bp)
protein (468aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZE98_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61652.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
Arginine/lysine/ornithine decarboxylases
L1_007_000M1_scaffold_1237_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10561..10707
-----------------
DNA (147bp)
protein (49aa)
RSAM-modified six-cysteine peptide n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQF4_9FIRM
RSAM-modified six-cysteine peptide {ECO:0000313|EMBL:EFB75077.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1237_12

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10880..12388
-----------------
DNA (1509bp)
protein (503aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZE97_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61651.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
Arylsulfatase regulator (Fe-S oxidoreductase)
L1_007_000M1_scaffold_1237_13
unknown

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comp(12606..12773)
-----------------
DNA (168bp)
protein (56aa)

This feature has no annotations

L1_007_000M1_scaffold_1237_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12819..14606)
-----------------
DNA (1788bp)
protein (596aa)
Peptidase, M24 family {ECO:0000313|EMBL:EFB75083.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFB75083.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Xaa-Pro aminopeptidase (EC:3.4.11.9)
Peptidase, M24 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQG0_9FIRM
L1_007_000M1_scaffold_1237_15
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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15239..16468
-----------------
DNA (1230bp)
protein (410aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M4F6_9FIRM
Putative GTPases (G3E family)
Uncharacterized protein {ECO:0000313|EMBL:EOS65949.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L1_007_000M1_scaffold_1237_16
unknown

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16718..16840
-----------------
DNA (123bp)
protein (41aa)

This feature has no annotations

L1_007_000M1_scaffold_1237_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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16833..17810
-----------------
DNA (978bp)
protein (326aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75080.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CobW/HypB/UreG, nucleotide-binding domain.
L1_007_000M1_scaffold_1237_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17947..18921)
-----------------
DNA (975bp)
protein (325aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP7_9FIRM
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:EFB74588.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1237_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18931..20130)
-----------------
DNA (1200bp)
protein (400aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EFB74587.1}; EC=2.6.1.- {ECO:0000313|EMBL:EFB74587.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aminotransferase (EC:2.6.1.1)
Aminotransferase, class I/II n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP6_9FIRM
L1_007_000M1_scaffold_1237_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20426..21082)
-----------------
DNA (657bp)
protein (219aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED (EC:3.1.3.18)
Putative phosphoglycolate phosphatase, bacterial n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP5_9FIRM
Putative phosphoglycolate phosphatase, bacterial {ECO:0000313|EMBL:EFB74586.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1237_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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21254..22114
-----------------
DNA (861bp)
protein (287aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP4_9FIRM
L1_007_000M1_scaffold_1237_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22281..23732)
-----------------
DNA (1452bp)
protein (484aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Signal transduction histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSD7_9FIRM
L1_007_000M1_scaffold_1237_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23725..24417)
-----------------
DNA (693bp)
protein (231aa)
Response regulator receiver domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSD8_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFB74423.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L1_007_000M1_scaffold_1237_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24757..25500)
-----------------
DNA (744bp)
protein (248aa)
Na/Pi-cotransporter II-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSD9_9FIRM
Na/Pi-cotransporter II-like protein {ECO:0000313|EMBL:EFB74424.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Na/Pi-cotransporter
L1_007_000M1_scaffold_1237_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25494..26495)
-----------------
DNA (1002bp)
protein (334aa)
Na/Pi-cotransporter II-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSD9_9FIRM
Na/Pi-cotransporter II-like protein {ECO:0000313|EMBL:EFB74424.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Na/Pi-cotransporter
L1_007_000M1_scaffold_1237_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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27390..28340
-----------------
DNA (951bp)
protein (317aa)
Putative Phosphate-binding protein PstS 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSE2_9FIRM
Putative Phosphate-binding protein PstS 2 {ECO:0000313|EMBL:EFB74427.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1237_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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28469..29362
-----------------
DNA (894bp)
protein (298aa)
Phosphate ABC transporter, permease protein PstC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSE3_9FIRM
Phosphate ABC transporter, permease protein PstC {ECO:0000313|EMBL:EFB74428.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)
L1_007_000M1_scaffold_1237_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29642..30169
-----------------
DNA (528bp)
protein (176aa)
Phosphate ABC transporter, permease protein PstA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSE4_9FIRM
Phosphate ABC transporter, permease protein PstA {ECO:0000313|EMBL:EFB74429.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
L1_007_000M1_scaffold_1237_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30453..31205
-----------------
DNA (753bp)
protein (251aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27)
Phosphate ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSE5_9FIRM
L1_007_000M1_scaffold_1237_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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31219..31893
-----------------
DNA (675bp)
protein (225aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSE6_9FIRM
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphate transport system regulatory protein PhoU
Displaying items 1-30 of 39 in total

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