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L1_007_000M1_scaffold_1349

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1349_1
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..219)
DNA (219bp) protein (73aa)
Uncharacterized protein n=3 Tax=Clostridium clostridioforme RepID=N9WLY7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ63892.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L1_007_000M1_scaffold_1349_2
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(454..669)
DNA (216bp) protein (72aa)
Excisionase family DNA binding domain-containing protein n=3 Tax=Clostridium clostridioforme RepID=N9Y8H6_9CLOT
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:ENZ63893.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L1_007_000M1_scaffold_1349_3
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

851..1516
DNA (666bp) protein (222aa)
Uncharacterized protein n=3 Tax=Clostridium clostridioforme RepID=N9XVV1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ63894.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L1_007_000M1_scaffold_1349_4
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1624..2922
DNA (1299bp) protein (433aa)
Integrase n=3 Tax=Clostridium clostridioforme RepID=N9XW86_9CLOT
Integrase {ECO:0000313|EMBL:ENZ63895.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L1_007_000M1_scaffold_1349_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3135..4511
DNA (1377bp) protein (459aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR60_9FIRM
L1_007_000M1_scaffold_1349_6
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5099..5530)
DNA (432bp) protein (144aa)
Rrf2 family protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RRF7_9FIRM
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:KJF39976.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
transcriptional regulator, BadM/Rrf2 family
L1_007_000M1_scaffold_1349_7
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

Not on your lists

5852..6784
DNA (933bp) protein (311aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
cysteine synthase A (EC:2.5.1.47)
Cysteine synthase n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5CWH4_9FIRM
L1_007_000M1_scaffold_1349_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6870..7949
DNA (1080bp) protein (360aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H285_9FIRM
L1_007_000M1_scaffold_1349_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8010..8480)
DNA (471bp) protein (157aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ09_9FIRM
L1_007_000M1_scaffold_1349_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8477..9409)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75202.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1349_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9569..10276
DNA (708bp) protein (236aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK45_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77143.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type antimicrobial peptide transport system, ATPase component
L1_007_000M1_scaffold_1349_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10277..14146
DNA (3870bp) protein (1290aa)
Efflux ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK46_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EFB77144.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted permease.
L1_007_000M1_scaffold_1349_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14242..15609)
DNA (1368bp) protein (456aa)
Transporter, major facilitator family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ11_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFB75203.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
MDR-type permease
L1_007_000M1_scaffold_1349_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15765..16628)
DNA (864bp) protein (288aa)
RNA methyltransferase, TrmH family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ12_9FIRM
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFB75204.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
rRNA methylases
L1_007_000M1_scaffold_1349_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16941..18230)
DNA (1290bp) protein (430aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine sulfhydrolase {ECO:0000313|EMBL:CBL01010.1}; EC=2.5.1.49 {ECO:0000313|EMBL:CBL01010.1};; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
O-acetylhomoserine sulfhydrolase n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K847_9FIRM
L1_007_000M1_scaffold_1349_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18848..19831
DNA (984bp) protein (328aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ08_9FIRM
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EFB75200.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
NAD-dependent epimerase/dehydratase
L1_007_000M1_scaffold_1349_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20007..21620
DNA (1614bp) protein (538aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75199.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_1349_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21781..23784
DNA (2004bp) protein (668aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75198.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1349_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23785..24408
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75197.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_1349_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24574..25698
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75196.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying 20 items

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