ggKbase home page

L1_007_000M1_scaffold_509

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_509_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

251..718
DNA (468bp) protein (156aa)
Heat shock protein Hsp20 n=3 Tax=Faecalibacterium prausnitzii RepID=D4K8B0_9FIRM
heat shock protein Hsp20
Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:EDP21170.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L1_007_000M1_scaffold_509_2
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(873..1307)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K515_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43260.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L1_007_000M1_scaffold_509_3
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1653..3524
DNA (1872bp) protein (624aa)
Bacterial extracellular solute-binding protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q044_9FIRM
Bacterial extracellular solute-binding protein {ECO:0000313|EMBL:CDC29180.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
ABC-type sugar transport system, periplasmic component
L1_007_000M1_scaffold_509_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3517..6486
DNA (2970bp) protein (990aa)
Response regulator receiver domain protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZI80_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFQ07125.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Signal transduction histidine kinase
L1_007_000M1_scaffold_509_5
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6799..8982)
DNA (2184bp) protein (728aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IX93_9CLOT
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CCY41397.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Signal transduction histidine kinase
L1_007_000M1_scaffold_509_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8966..9787)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPW1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79986.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L1_007_000M1_scaffold_509_7
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10399..11268
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IBQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY34397.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
amino acid ABC transporter substrate-binding protein
L1_007_000M1_scaffold_509_8
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11295..11993
DNA (699bp) protein (233aa)
Amino acid ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IC76_9FIRM
Amino acid ABC transporter permease protein {ECO:0000313|EMBL:CCY34396.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
polar amino acid ABC transporter inner membrane subunit
L1_007_000M1_scaffold_509_9
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11996..12505
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HXD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY34395.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L1_007_000M1_scaffold_509_10
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12525..13277
DNA (753bp) protein (251aa)
Amino acid ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I1X6_9FIRM
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCY34394.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
amino acid ABC transporter ATP-binding protein
L1_007_000M1_scaffold_509_11
Fibrobacter succinogenes, Fibrobacter, Fibrobacterales, Fibrobacteria, Fibrobacteres, Bacteria

Not on your lists

13296..14294
DNA (999bp) protein (333aa)
Cysteine synthase family protein n=1 Tax=Fibrobacter succinogenes (strain ATCC 19169 / S85) RepID=C9RQ19_FIBSS
cysteine synthase
Cysteine synthase family protein {ECO:0000313|EMBL:ADL24982.1}; TaxID=59374 species="Bacteria; Fibrobacteres; Fibrobacterales; Fibrobacteraceae; Fibrobacter.;" source="Fibrobacter succinogenes (strain ATCC 19169 / S85).;"
L1_007_000M1_scaffold_509_12
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14308..14700
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M924_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64347.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
L1_007_000M1_scaffold_509_13
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

14758..15921
DNA (1164bp) protein (388aa)
Cys/Met metabolism PLP-dependent enzyme n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XK01_9FIRM
Cys/Met metabolism PLP-dependent enzyme {ECO:0000313|EMBL:CDA15160.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
Cys/Met metabolism pyridoxal-phosphate-dependent protein
L1_007_000M1_scaffold_509_14
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15938..17140
DNA (1203bp) protein (401aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R5HPM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31670.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
class I and II aminotransferase
L1_007_000M1_scaffold_509_15

Not on your lists

17959..18612
DNA (654bp) protein (218aa)
Carbohydrate kinase, YjeF related protein n=1 Tax=human gut metagenome RepID=K1RTU6_9ZZZZ
Carbohydrate kinase, YjeF related protein {ECO:0000313|EMBL:EKC46824.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
yjeF N-terminal region
L1_007_000M1_scaffold_509_16
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(18618..19529)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ETH4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX91902.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L1_007_000M1_scaffold_509_17
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(19562..20905)
DNA (1344bp) protein (448aa)
MATE efflux family protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EHM4_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CCX90819.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
MATE efflux family protein
L1_007_000M1_scaffold_509_18
Lactobacillus ruminis CAG:367, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21049..21507
DNA (459bp) protein (153aa)
M protein trans-acting positive regulator (MGA) HTH domain protein n=2 Tax=Lactobacillus RepID=E7FNM2_9LACO
Transcriptional regulator YwrC {ECO:0000313|EMBL:CDC55742.1}; TaxID=1263085 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; environmental samples.;" source="Lactobacillus ruminis CAG:367.;"
transcriptional regulator, AsnC family
L1_007_000M1_scaffold_509_19
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

Not on your lists

22136..23383
DNA (1248bp) protein (416aa)
Leucine-isoleucine-valine-threonine-and alanine-binding protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZSR5_9FIRM
Leucine-isoleucine-valine-threonine-and alanine-binding protein {ECO:0000313|EMBL:CDD46394.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
L1_007_000M1_scaffold_509_20
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23501..24391
DNA (891bp) protein (297aa)
Branched-chain amino acid ABC transporter permease n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZJW1_9FIRM
ABC transporter permease {ECO:0000313|EMBL:KEZ90962.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
branched-chain amino acid ABC transporter permease
L1_007_000M1_scaffold_509_21
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24407..25402
DNA (996bp) protein (332aa)
Branched-chain amino acid ABC transporter permease protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZZE0_9FIRM
Amino acid/amide ABC transporter membrane protein 2, HAAT family {ECO:0000313|EMBL:EXG85581.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
branched-chain amino acid transporter permease livM
L1_007_000M1_scaffold_509_22

Not on your lists

25409..26200
DNA (792bp) protein (264aa)
livG; branched-chain amino acid transport ATP-binding protein livG (EC:3.6.3.31)
High-affinity branched-chain amino acid transport ATP-binding protein livG n=3 Tax=human gut metagenome RepID=K1UK27_9ZZZZ
High-affinity branched-chain amino acid transport ATP-binding protein livG {ECO:0000313|EMBL:EKC71871.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_509_23
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26193..26891
DNA (699bp) protein (233aa)
ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZDD7_9FIRM
Amino acid ABC transporter ATPase {ECO:0000313|EMBL:KEZ90959.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
livF; livf
L1_007_000M1_scaffold_509_24

Not on your lists

26904..27554
DNA (651bp) protein (217aa)
Cytidylate kinase n=1 Tax=human gut metagenome RepID=K1TJR5_9ZZZZ
Cytidylate kinase {ECO:0000313|EMBL:EKC59461.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_509_25
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27681..28538
DNA (858bp) protein (286aa)
Aminotransferase class IV n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R873_CLOSW
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase {ECO:0000313|EMBL:EXG85585.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
class IV aminotransferase
L1_007_000M1_scaffold_509_26
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28558..29625
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FV51_CLOPA
Uncharacterized protein {ECO:0000313|EMBL:EXG85586.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
hypothetical protein
L1_007_000M1_scaffold_509_27

Not on your lists

29642..30337
DNA (696bp) protein (232aa)
Uncharacterized protein n=2 Tax=human gut metagenome RepID=K1S3S3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC50029.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L1_007_000M1_scaffold_509_28
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30334..31326
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5C9T1_9FIRM
Biotin-dependent carboxylase-like protein {ECO:0000313|EMBL:EXG85588.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
biotin-dependent carboxylase uncharacterized domain
L1_007_000M1_scaffold_509_29
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31341..32132
DNA (792bp) protein (264aa)
UPF0317 protein BN785_01390 n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5CL16_9FIRM
UPF0317 protein K413DRAFT_2379 {ECO:0000256|HAMAP-Rule:MF_01830}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
hypothetical protein
L1_007_000M1_scaffold_509_30
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32147..32902
DNA (756bp) protein (252aa)
UPF0271 protein BN457_01108 n=1 Tax=Dorea sp. CAG:105 RepID=R5D7F4_9FIRM
UPF0271 protein K413DRAFT_2380 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
LamB/YcsF family protein
Displaying items 1-30 of 43 in total

View Taxonomy