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L1_007_000M1_scaffold_584

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_584_1
Blautia sp. CAG:237, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..251
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:237 RepID=R6LXY2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB78837.1}; TaxID=1262755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:237.;"
hypothetical protein
L1_007_000M1_scaffold_584_2
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(377..1813)
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EI84_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX92410.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
peptidase M20
L1_007_000M1_scaffold_584_3
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(1834..2514)
DNA (681bp) protein (227aa)
Putative membrane protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ELX4_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CCX92409.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
membrane protein
L1_007_000M1_scaffold_584_4
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(2530..3264)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EIZ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX92408.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
membrane protein
L1_007_000M1_scaffold_584_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3457..4857
DNA (1401bp) protein (467aa)
DNA repair protein radA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU8_9FIRM
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA repair protein RadA
L1_007_000M1_scaffold_584_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4869..5744
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76605.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_584_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5741..6670
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76604.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_584_8
unknown

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comp(6637..6768)
DNA (132bp) protein (44aa)

This feature has no annotations

L1_007_000M1_scaffold_584_9
unknown

Not on your lists

comp(6731..6931)
DNA (201bp) protein (67aa)

This feature has no annotations

L1_007_000M1_scaffold_584_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7457..8527
DNA (1071bp) protein (357aa)
Phage integrase SAM-like domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU1_9FIRM
Phage integrase SAM-like domain protein {ECO:0000313|EMBL:EFB76599.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
xerC; Tyrosine recombinase XerC
L1_007_000M1_scaffold_584_11
unknown

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comp(8468..9112)
DNA (645bp) protein (215aa)

This feature has no annotations

L1_007_000M1_scaffold_584_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9112..9525)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76597.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_584_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9584..9934)
DNA (351bp) protein (117aa)
Preprotein translocase, YajC subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT8_9FIRM
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EFB76596.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
preprotein translocase, YajC subunit
L1_007_000M1_scaffold_584_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10015..11148)
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT7_9FIRM
L1_007_000M1_scaffold_584_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11260..12288)
DNA (1029bp) protein (343aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT5_9FIRM
L1_007_000M1_scaffold_584_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12657..13733
DNA (1077bp) protein (359aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EFB76591.1}; EC=1.2.1.11 {ECO:0000313|EMBL:EFB76591.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT3_9FIRM
L1_007_000M1_scaffold_584_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13773..14663
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT2_9FIRM
L1_007_000M1_scaffold_584_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14729..15496
DNA (768bp) protein (256aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT1_9FIRM
L1_007_000M1_scaffold_584_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15493..16704
DNA (1212bp) protein (404aa)
Bacterial capsule synthesis protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT0_9FIRM
Bacterial capsule synthesis protein {ECO:0000313|EMBL:EFB76588.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)
L1_007_000M1_scaffold_584_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16723..17178
DNA (456bp) protein (152aa)
ACT domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS9_9FIRM
ACT domain protein {ECO:0000313|EMBL:EFB76587.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aspartokinases
L1_007_000M1_scaffold_584_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17229..18134)
DNA (906bp) protein (302aa)
CAAX amino terminal protease family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS8_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EFB76586.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CAAX amino terminal protease family.
L1_007_000M1_scaffold_584_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18152..18628)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76585.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_584_23
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18632..18829)
DNA (198bp) protein (66aa)
DNA-binding helix-turn-helix protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8E3_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEU95648.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Predicted transcriptional regulators
L1_007_000M1_scaffold_584_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18999..20936
DNA (1938bp) protein (646aa)
NAD+ synthase {ECO:0000313|EMBL:EFB76583.1}; EC=6.3.1.5 {ECO:0000313|EMBL:EFB76583.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
NAD+ synthetase (EC:6.3.5.1)
NAD+ synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS5_9FIRM
L1_007_000M1_scaffold_584_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20988..21575)
DNA (588bp) protein (196aa)
Small primase-like proteins (Toprim domain) (EC:3.1.26.8)
Putative ribonuclease M5 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP8_9FIRM
Putative ribonuclease M5 {ECO:0000313|EMBL:EFB76556.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_584_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21572..22603)
DNA (1032bp) protein (344aa)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EFB76555.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EFB76555.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA polymerase III, delta subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP7_9FIRM
DNA polymerase III, delta subunit
L1_007_000M1_scaffold_584_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22590..24659)
DNA (2070bp) protein (690aa)
ComEC/Rec2-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP6_9FIRM
ComEC/Rec2-like protein {ECO:0000313|EMBL:EFB76554.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ComEC/Rec2-related protein
L1_007_000M1_scaffold_584_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24663..25202)
DNA (540bp) protein (180aa)
Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins (EC:2.4.2.7)
Phosphoribosyl transferase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP5_9FIRM
Phosphoribosyl transferase domain protein {ECO:0000313|EMBL:EFB76553.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_584_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25252..25596)
DNA (345bp) protein (115aa)
Histidine triad domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP4_9FIRM
Histidine triad domain protein {ECO:0000313|EMBL:EFB76552.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
L1_007_000M1_scaffold_584_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25637..28297)
DNA (2661bp) protein (887aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP3_9FIRM
Displaying items 1-30 of 90 in total

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