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L1_007_000M1_scaffold_711

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_711_1
unknown

Not on your lists

2..88
-----------------
DNA (87bp)
protein (29aa)

This feature has no annotations

L1_007_000M1_scaffold_711_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

342..2864
-----------------
DNA (2523bp)
protein (841aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77398.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RND family transporter
L1_007_000M1_scaffold_711_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2861..6037
-----------------
DNA (3177bp)
protein (1059aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77399.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_711_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6228..6929)
-----------------
DNA (702bp)
protein (234aa)
Peptidase C26 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRE2_9FIRM
Peptidase C26 {ECO:0000313|EMBL:EFB74746.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
peptidase C26
L1_007_000M1_scaffold_711_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7029..7475)
-----------------
DNA (447bp)
protein (149aa)
CBS domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR4_9FIRM
CBS domain protein {ECO:0000313|EMBL:EFB76362.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CBS domain.
L1_007_000M1_scaffold_711_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7694..9826
-----------------
DNA (2133bp)
protein (711aa)
DAK2 domain fusion protein YloV n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR2_9FIRM
DAK2 domain fusion protein YloV {ECO:0000313|EMBL:EFB76360.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DAK2 domain fusion protein YloV
L1_007_000M1_scaffold_711_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9961..12003
-----------------
DNA (2043bp)
protein (681aa)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EFB76359.1}; EC=3.6.1.- {ECO:0000313|EMBL:EFB76359.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR1_9FIRM
L1_007_000M1_scaffold_711_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12419..13705
-----------------
DNA (1287bp)
protein (429aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLR0_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EFB76358.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
D-alanyl-D-alanine carboxypeptidase
L1_007_000M1_scaffold_711_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13730..15175
-----------------
DNA (1446bp)
protein (482aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLQ9_9FIRM
L1_007_000M1_scaffold_711_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15347..15742
-----------------
DNA (396bp)
protein (132aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLQ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76356.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted membrane protein
L1_007_000M1_scaffold_711_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15811..15924
-----------------
DNA (114bp)
protein (38aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76355.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_711_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16115..16252
-----------------
DNA (138bp)
protein (46aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76354.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_711_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16580..17599
-----------------
DNA (1020bp)
protein (340aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB76352.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB76352.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLQ4_9FIRM
Glycosyltransferases involved in cell wall biogenesis
L1_007_000M1_scaffold_711_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17609..18262
-----------------
DNA (654bp)
protein (218aa)
Haloacid dehalogenase-like hydrolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLQ3_9FIRM
Haloacid dehalogenase-like hydrolase {ECO:0000313|EMBL:EFB76351.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
gph; HAD-superfamily hydrolase, subfamily IA, variant 1
L1_007_000M1_scaffold_711_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18264..19103)
-----------------
DNA (840bp)
protein (280aa)
HTH-type transcriptional regulator HmrR n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLQ2_9FIRM
HTH-type transcriptional regulator HmrR {ECO:0000313|EMBL:EFB76350.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted transcriptional regulators
L1_007_000M1_scaffold_711_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19242..19634
-----------------
DNA (393bp)
protein (131aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLQ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76349.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_711_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19669..21024
-----------------
DNA (1356bp)
protein (452aa)
uncharacterized domain HDIG (EC:2.7.7.72 3.1.4.- 3.1.3.-)
tRNA nucleotidyltransferase/poly(A) polymerase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLQ0_9FIRM
tRNA nucleotidyltransferase/poly(A) polymerase family protein {ECO:0000313|EMBL:EFB76348.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_711_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21021..21395
-----------------
DNA (375bp)
protein (125aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphopantethiene--protein transferase domain (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP8_9FIRM
L1_007_000M1_scaffold_711_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21426..22514
-----------------
DNA (1089bp)
protein (363aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76345.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_711_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22568..22945
-----------------
DNA (378bp)
protein (126aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
mRNA interferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLP6_9FIRM
Growth inhibitor
L1_007_000M1_scaffold_711_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22972..23667)
-----------------
DNA (696bp)
protein (232aa)
LrgB-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJQ7_9FIRM
LrgB-like protein {ECO:0000313|EMBL:EFB77005.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative effector of murein hydrolase
L1_007_000M1_scaffold_711_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23660..24019)
-----------------
DNA (360bp)
protein (120aa)
LrgA family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJQ8_9FIRM
LrgA family protein {ECO:0000313|EMBL:EFB77006.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LrgA family protein
L1_007_000M1_scaffold_711_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24211..24639
-----------------
DNA (429bp)
protein (143aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJQ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77007.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_711_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24905..26488
-----------------
DNA (1584bp)
protein (528aa)
ATP phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00008790}; EC=2.4.2.17 {ECO:0000256|SAAS:SAAS00046302};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP phosphoribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR0_9FIRM
ATP phosphoribosyltransferase
L1_007_000M1_scaffold_711_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26485..27768
-----------------
DNA (1284bp)
protein (428aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR1_9FIRM
L1_007_000M1_scaffold_711_26
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27768..28301
-----------------
DNA (534bp)
protein (178aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HNB2_9FIRM
Transposase {ECO:0000313|EMBL:KJF28359.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
transposase
L1_007_000M1_scaffold_711_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28298..29362
-----------------
DNA (1065bp)
protein (355aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR2_9FIRM
L1_007_000M1_scaffold_711_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29385..30002
-----------------
DNA (618bp)
protein (206aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
imidazole glycerol phosphate synthase subunit hisH (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR3_9FIRM
L1_007_000M1_scaffold_711_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30022..30741
-----------------
DNA (720bp)
protein (240aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylidenea mino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR4_9FIRM
L1_007_000M1_scaffold_711_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30746..31504
-----------------
DNA (759bp)
protein (253aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hisF; imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJR5_9FIRM
Displaying items 1-30 of 87 in total

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