ggKbase home page

L1_007_000M1_scaffold_791

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_791_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

229..1359
DNA (1131bp) protein (377aa)
3D domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ68_9FIRM
3D domain protein {ECO:0000313|EMBL:EFB77228.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
G5 domain-containing protein
L1_007_000M1_scaffold_791_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1410..2039)
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK98_9FIRM
L1_007_000M1_scaffold_791_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2097..2549)
DNA (453bp) protein (151aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EFB76907.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EFB76907.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK97_9FIRM
L1_007_000M1_scaffold_791_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2546..3250)
DNA (705bp) protein (235aa)
Universal bacterial protein YeaZ n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK96_9FIRM
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EFB76906.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Inactive homolog of metal-dependent proteases, putative molecular chaperone
L1_007_000M1_scaffold_791_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3493..3906)
DNA (414bp) protein (138aa)
Hydrolase, P-loop family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK95_9FIRM
Hydrolase, P-loop family {ECO:0000313|EMBL:EFB76905.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical nucleotide-binding protein
L1_007_000M1_scaffold_791_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4072..5235
DNA (1164bp) protein (388aa)
Cell cycle protein, FtsW/RodA/SpoVE family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK94_9FIRM
Cell cycle protein, FtsW/RodA/SpoVE family {ECO:0000313|EMBL:EFB76904.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Bacterial cell division membrane protein
L1_007_000M1_scaffold_791_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5270..5479)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76903.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_791_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5690..6232
DNA (543bp) protein (181aa)
Sigma-70 region 2 n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZNX7_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EFQ05131.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
RNA polymerase sigma factor, sigma-70 family
L1_007_000M1_scaffold_791_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6219..6920
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K1W1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL00260.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L1_007_000M1_scaffold_791_10
unknown

Not on your lists

7051..7548
DNA (498bp) protein (166aa)

This feature has no annotations

L1_007_000M1_scaffold_791_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7818..9185)
DNA (1368bp) protein (456aa)
UPF0210 protein SUBVAR_04533 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKA2_9FIRM
UPF0210 protein SUBVAR_04533 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_791_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9198..9467)
DNA (270bp) protein (90aa)
UPF0237 protein SUBVAR_04534 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKA3_9FIRM
UPF0237 protein SUBVAR_04534 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ACT domain-containing protein
L1_007_000M1_scaffold_791_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9855..11390)
DNA (1536bp) protein (512aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN70_9FIRM
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EFB76005.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase family associated with various cellular activities (AAA).
L1_007_000M1_scaffold_791_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11394..12719)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76004.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_791_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12922..13821)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76003.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_791_16
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13997..14491)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SN54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC58964.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
hypothetical protein
L1_007_000M1_scaffold_791_17
Anaerostipes sp. CAG:276, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14743..15243)
DNA (501bp) protein (167aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=2 Tax=Anaerostipes RepID=E5VT47_9FIRM
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:CDC35101.1}; TaxID=1262699 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes; environmental samples.;" source="Anaerostipes sp. CAG:276.;"
putative Fimbrial protein precursor (Pilin) (Strain K122-4)
L1_007_000M1_scaffold_791_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15598..16962
DNA (1365bp) protein (455aa)
MATE efflux family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN67_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EFB76002.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
MATE efflux family protein
L1_007_000M1_scaffold_791_19
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16999..18165)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XBB0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY97007.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
hypothetical protein
L1_007_000M1_scaffold_791_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18334..19995)
DNA (1662bp) protein (554aa)
Glutamine--tRNA ligase {ECO:0000256|SAAS:SAAS00023088}; EC=6.1.1.18 {ECO:0000256|SAAS:SAAS00023088};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN66_9FIRM
L1_007_000M1_scaffold_791_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20269..21414
DNA (1146bp) protein (382aa)
GDSL-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM27_9FIRM
GDSL-like protein {ECO:0000313|EMBL:EFB76292.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_791_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21449..22717
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76291.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
5-bromo-4-chloroindolyl phosphate hydrolysis protein.
L1_007_000M1_scaffold_791_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22925..23722
DNA (798bp) protein (266aa)
ABC-2 type transporter n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM25_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC transporter
L1_007_000M1_scaffold_791_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23735..24475
DNA (741bp) protein (247aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM24_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB76289.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Teichoic acids export ATP-binding protein TagH
L1_007_000M1_scaffold_791_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24635..26419
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76288.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_791_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26423..28183
DNA (1761bp) protein (587aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76287.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_791_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28234..29457
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76215.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_791_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29454..30653
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76215.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_791_29
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30790..31548)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GYG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26784.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L1_007_000M1_scaffold_791_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31812..32825)
DNA (1014bp) protein (338aa)
4Fe-4S binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNF5_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EFB76090.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted oxidoreductases of the aldo/keto reductase family
Displaying items 1-30 of 56 in total

View Taxonomy