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L1_007_000M1_scaffold_979

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_979_1
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..1290)
DNA (1290bp) protein (430aa)
Ferrous iron transport protein B n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q4Y6_9FIRM
Ferrous iron transport protein B {ECO:0000313|EMBL:CDC30825.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
ferrous iron transporter FeoB
L1_007_000M1_scaffold_979_2
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1321..1542)
DNA (222bp) protein (74aa)
FeoA domain protein n=2 Tax=Faecalibacterium RepID=E2ZLE8_9FIRM
FeoA domain protein {ECO:0000313|EMBL:CDC30827.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Fe2+ transport system protein A
L1_007_000M1_scaffold_979_3

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comp(1605..1817)
DNA (213bp) protein (71aa)
FeoA family protein n=1 Tax=human gut metagenome RepID=K1T790_9ZZZZ
FeoA family protein {ECO:0000313|EMBL:EKC55241.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Fe2+ transport system protein A
L1_007_000M1_scaffold_979_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2043..2417)
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYE0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64853.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Copper chaperone
L1_007_000M1_scaffold_979_5
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2574..3002)
DNA (429bp) protein (143aa)
Flavodoxin n=3 Tax=Clostridium PF4_CLOSY">RepID=E9SPF4_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93307.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L1_007_000M1_scaffold_979_6
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3041..3634)
DNA (594bp) protein (198aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QRJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK62151.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L1_007_000M1_scaffold_979_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3932..4474)
DNA (543bp) protein (181aa)
Rubrerythrin n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH8_9FIRM
Rubrerythrin {ECO:0000313|EMBL:EFB77337.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Rubrerythrin
L1_007_000M1_scaffold_979_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4661..5035
DNA (375bp) protein (125aa)
Transcriptional regulator, Fur family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH7_9FIRM
Transcriptional regulator, Fur family {ECO:0000313|EMBL:EFB77336.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
FUR family transcriptional regulator
L1_007_000M1_scaffold_979_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5088..6161
DNA (1074bp) protein (358aa)
Acyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH6_9FIRM
Acyltransferase {ECO:0000313|EMBL:EFB77335.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_979_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6329..6814
DNA (486bp) protein (162aa)
Sigma-70 region 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH4_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EFB77333.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ECF subfamily RNA polymerase sigma-24 factor
L1_007_000M1_scaffold_979_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6804..7814
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77332.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_979_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7906..9261)
DNA (1356bp) protein (452aa)
Citrate synthase (EC:2.3.3.1 2.3.3.5)
Citrate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ17_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_979_13

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comp(9548..11479)
DNA (1932bp) protein (644aa)
pullulanase, type I (EC:3.2.1.41)
Carbohydrate-active enzyme n=1 Tax=uncultured organism RepID=D9ZEB5_9ZZZZ
Carbohydrate-active enzyme {ECO:0000313|EMBL:ADD61669.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L1_007_000M1_scaffold_979_14
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11576..11989)
DNA (414bp) protein (138aa)
Putative membrane protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZR36_9FIRM
Putative membrane protein {ECO:0000313|EMBL:EDM88043.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Predicted membrane protein
L1_007_000M1_scaffold_979_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12030..12755)
DNA (726bp) protein (242aa)
Pyridoxal phosphate enzyme, YggS family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNZ9_9FIRM
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:EFB75495.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pyridoxal phosphate enzyme, YggS family
L1_007_000M1_scaffold_979_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12752..13309)
DNA (558bp) protein (186aa)
UPF0340 protein SUBVAR_06114 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP00_9FIRM
UPF0340 protein SUBVAR_06114 {ECO:0000256|HAMAP-Rule:MF_00800}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical protein TIGR01440
L1_007_000M1_scaffold_979_17
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13590..13937)
DNA (348bp) protein (116aa)
Cupin domain n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QII2_9FIRM
Cupin domain {ECO:0000313|EMBL:CDC30721.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Cupin domain.
L1_007_000M1_scaffold_979_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14155..15966)
DNA (1812bp) protein (604aa)
ABC transporter, ATP-binding protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAM6_9FIRM
ABC-type multidrug transport system, ATPase and permease components
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDP21594.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L1_007_000M1_scaffold_979_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15968..18175)
DNA (2208bp) protein (736aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPZ7_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75189.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L1_007_000M1_scaffold_979_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18159..18677)
DNA (519bp) protein (173aa)
Transcriptional regulator, MarR family n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAM9_9FIRM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EDP21596.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Transcriptional regulators
L1_007_000M1_scaffold_979_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18800..20293)
DNA (1494bp) protein (498aa)
Polygalacturonase (Pectinase) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP01_9FIRM
Polygalacturonase (Pectinase) {ECO:0000313|EMBL:EFB75497.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pgl28B; polygalacturonase Pgl28B
L1_007_000M1_scaffold_979_22
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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20556..22655
DNA (2100bp) protein (700aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
UvrD/REP helicase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0W2_9FIRM
L1_007_000M1_scaffold_979_23
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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22826..23821
DNA (996bp) protein (332aa)
putative L-asparaginase (EC:3.5.1.1)
L-asparaginase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AR74_9FIRM
L-asparaginase {ECO:0000313|EMBL:CCX45895.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L1_007_000M1_scaffold_979_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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23943..25916
DNA (1974bp) protein (658aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS92_9FIRM
L1_007_000M1_scaffold_979_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26083..27525
DNA (1443bp) protein (481aa)
Dipeptidase {ECO:0000313|EMBL:EDP21286.1}; EC=3.4.-.- {ECO:0000313|EMBL:EDP21286.1};; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
dipeptidase A. Cysteine peptidase. MEROPS family C69 (EC:3.4.-.-)
Dipeptidase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SCN0_9FIRM
L1_007_000M1_scaffold_979_26

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27743..28981
DNA (1239bp) protein (413aa)
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase (ATP) n=1 Tax=human gut metagenome RepID=K1SDX2_9ZZZZ
Phosphoenolpyruvate carboxykinase (ATP) {ECO:0000313|EMBL:EKC45586.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_979_27
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28998..29336
DNA (339bp) protein (113aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Clostridium sp. CAG:510 RepID=R6CCA7_9CLOT
L1_007_000M1_scaffold_979_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29589..30974)
DNA (1386bp) protein (462aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H2W7_9FIRM
L1_007_000M1_scaffold_979_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31079..31537)
DNA (459bp) protein (153aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPG7_9FIRM
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EFB75429.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L1_007_000M1_scaffold_979_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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31700..32551
DNA (852bp) protein (284aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNW2_9FIRM
Displaying items 1-30 of 33 in total

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