ggKbase home page

L1_007_000M1_scaffold_6326

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_6326_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(486..2468)
DNA (1983bp) protein (661aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRM7_9FIRM
L1_007_000M1_scaffold_6326_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2877..3971)
DNA (1095bp) protein (365aa)
DNA replication and repair protein RecF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRM9_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
recF protein
L1_007_000M1_scaffold_6326_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3971..4291)
DNA (321bp) protein (107aa)
S4 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN0_9FIRM
S4 domain protein {ECO:0000313|EMBL:EFB74647.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_6326_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4296..5405)
DNA (1110bp) protein (370aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN1_9FIRM
L1_007_000M1_scaffold_6326_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5895..7217)
DNA (1323bp) protein (441aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN4_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
chromosomal replication initiator protein DnaA
L1_007_000M1_scaffold_6326_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7630..7764
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN5_9FIRM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L34P
L1_007_000M1_scaffold_6326_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8099..8464
DNA (366bp) protein (122aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribonuclease P protein component, eubacterial (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN7_9FIRM
L1_007_000M1_scaffold_6326_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8461..8721
DNA (261bp) protein (87aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRN8_9FIRM
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_6326_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8955..9926
DNA (972bp) protein (324aa)
Membrane protein insertase, YidC/Oxa1 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRP0_9FIRM
Membrane protein insertase, YidC/Oxa1 family {ECO:0000313|EMBL:EFB74657.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L1_007_000M1_scaffold_6326_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10092..11201
DNA (1110bp) protein (370aa)
R3H domain protein (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRU7_9FIRM
R3H domain protein {ECO:0000313|EMBL:EFB74582.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted RNA-binding protein
L1_007_000M1_scaffold_6326_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11852..13156)
DNA (1305bp) protein (435aa)
Efflux ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRB5_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EFB74758.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_6326_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13143..14606)
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74759.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_6326_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14821..15618)
DNA (798bp) protein (266aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRB7_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB74760.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC transporter ATP-binding protein
L1_007_000M1_scaffold_6326_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15967..16644
DNA (678bp) protein (226aa)
Methyltransferase, YaeB family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRC1_9FIRM
Methyltransferase, YaeB family {ECO:0000313|EMBL:EFB74764.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_6326_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17158..18429
DNA (1272bp) protein (424aa)
Pyruvate synthase {ECO:0000313|EMBL:EFB74765.1}; EC=1.2.7.1 {ECO:0000313|EMBL:EFB74765.1};; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric (EC:1.2.7.-)
Pyruvate synthase (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRC2_9FIRM
L1_007_000M1_scaffold_6326_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18390..19505
DNA (1116bp) protein (372aa)
Pyruvate synthase {ECO:0000313|EMBL:EFB74765.1}; EC=1.2.7.1 {ECO:0000313|EMBL:EFB74765.1};; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric (EC:1.2.7.-)
Pyruvate synthase (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRC2_9FIRM
Displaying 16 items

View Taxonomy