ggKbase home page

L1_007_000M1_scaffold_2996

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_2996_1
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..118
DNA (117bp) protein (39aa)
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7ANN8_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEC58773.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
Site-specific recombinases, DNA invertase Pin homologs
L1_007_000M1_scaffold_2996_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

262..756
DNA (495bp) protein (165aa)
HD domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLZ2_9FIRM
HD domain protein {ECO:0000313|EMBL:EFB76257.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L1_007_000M1_scaffold_2996_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

762..1505
DNA (744bp) protein (248aa)
ThiF family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLY8_9FIRM
ThiF family protein {ECO:0000313|EMBL:EFB76253.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis
L1_007_000M1_scaffold_2996_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1857..3410
DNA (1554bp) protein (518aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Ribonuclease Y n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPZ3_9FIRM
conserved hypothetical protein YmdA/YtgF
L1_007_000M1_scaffold_2996_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3722..5899)
DNA (2178bp) protein (726aa)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EFB75290.1}; EC=1.17.4.2 {ECO:0000313|EMBL:EFB75290.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPU4_9FIRM
L1_007_000M1_scaffold_2996_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6329..6877
DNA (549bp) protein (183aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribonucleoside-triphosphate reductase class III activase subunit (EC:1.97.1.4 1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPU1_9FIRM
L1_007_000M1_scaffold_2996_7
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6920..8296
DNA (1377bp) protein (459aa)
MATE efflux family protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q2D2_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDC30883.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
putative efflux protein, MATE family
L1_007_000M1_scaffold_2996_8
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8484..9530
DNA (1047bp) protein (349aa)
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.1)
GroES-like protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AC75_9CLOT
GroES-like protein {ECO:0000313|EMBL:CDD58393.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
L1_007_000M1_scaffold_2996_9
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9573..10343
DNA (771bp) protein (257aa)
TraX protein n=2 Tax=Roseburia RepID=R5HI76_9FIRM
TraX protein {ECO:0000313|EMBL:CCY29278.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
TraX protein.
L1_007_000M1_scaffold_2996_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10589..11263)
DNA (675bp) protein (225aa)
Transporter, major facilitator family protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGG7_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:EDP20266.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
Displaying 10 items

View Taxonomy