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L1_007_000M1_scaffold_3854

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_3854_1
unknown

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comp(170..796)
DNA (627bp) protein (209aa)
Cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase {ECO:0000313|EMBL:CBL37366.1}; EC=2.7.4.14 {ECO:0000313|EMBL:CBL37366.1};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Cytidylate kinase n=3 Tax=Clostridiales RepID=D4MXM1_9FIRM
L1_007_000M1_scaffold_3854_2
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(908..1846)
DNA (939bp) protein (313aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2 2.7.1.26)
Riboflavin biosynthesis protein RibF n=3 Tax=Clostridiales RepID=B0NZN1_9CLOT
L1_007_000M1_scaffold_3854_3
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1856..2755)
DNA (900bp) protein (300aa)
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
tRNA pseudouridine synthase B n=3 Tax=Clostridiales RepID=D4MXM3_9FIRM
L1_007_000M1_scaffold_3854_4
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2769..3713)
DNA (945bp) protein (315aa)
Exopolyphosphatase-related proteins n=4 Tax=Clostridiales RepID=D4MXM4_9FIRM
Exopolyphosphatase-related proteins
DHH family protein {ECO:0000313|EMBL:CDA32956.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_007_000M1_scaffold_3854_5
unknown

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comp(3700..4071)
DNA (372bp) protein (124aa)
Ribosome-binding factor A n=5 Tax=Clostridiales RepID=D4MXM5_9FIRM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_007_000M1_scaffold_3854_6
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4093..6345)
DNA (2253bp) protein (751aa)
Translation initiation factor IF-2 n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5YZV7_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
translation initiation factor IF-2
L1_007_000M1_scaffold_3854_7
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6366..6665)
DNA (300bp) protein (100aa)
Ribosomal protein HS6-type (S12/L30/L7a) n=4 Tax=Clostridiales RepID=D4MXM8_9FIRM
Ribosomal protein HS6-type (S12/L30/L7a)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein {ECO:0000313|EMBL:CDA32959.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L1_007_000M1_scaffold_3854_8
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6658..6927)
DNA (270bp) protein (90aa)
Predicted nucleic-acid-binding protein implicated in transcription termination n=5 Tax=Clostridiales RepID=D4MXM9_9FIRM
Predicted nucleic-acid-binding protein implicated in transcription termination
Thrombospondin-1 {ECO:0000313|EMBL:EFV15966.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L1_007_000M1_scaffold_3854_9
unknown

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comp(6949..8136)
DNA (1188bp) protein (396aa)
Transcription termination factor NusA n=5 Tax=Clostridiales RepID=D4MXN0_9FIRM
transcription termination factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L1_007_000M1_scaffold_3854_10
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8152..8616)
DNA (465bp) protein (155aa)
Ribosome maturation factor RimP n=3 Tax=Clostridiales RepID=B0NZR5_9CLOT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
hypothetical protein
L1_007_000M1_scaffold_3854_11
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8764..8868)
DNA (105bp) protein (35aa)
DNA polymerase III catalytic subunit, PolC type (EC:2.7.7.7)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
DNA polymerase III polC-type n=2 Tax=Lachnospiraceae RepID=R5YZW1_9FIRM
Displaying 11 items

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